Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20]
1,978 sequences; 19,929,430 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1519 291 2e-73
seq1914 248 2e-60
>seq1519
Length=103858
Score = 291 bits (322), Expect = 2e-73
Identities = 796/1203 (66%), Gaps = 31/1203 (3%)
Strand=Plus/Plus
Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429
|||||| ||||||| |||| | | || ||| | |||| || || ||| || ||||
Sbjct 43294 CGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGT 43353
Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489
|||||||||||||||||||| | ||| |||| | ||||||| || | || |||
Sbjct 43354 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGAC-TCAAACGCA 43412
Query 221490 TACGC-AGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTG 221547
||| | | ||| |||| | | || || || ||||| || ||||| ||||| || | |||
Sbjct 43413 TACCCCATGATCATGAACG-CATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTG 43471
Query 221548 TCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTT 221607
| | ||||||| | ||| || || ||||| |||| | |||||| | |||||
Sbjct 43472 ACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTT 43531
Query 221608 GAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTC 221667
|||||| |||| | || | || | ||| || || ||
Sbjct 43532 CAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTA------------AAGTC 43579
Query 221668 GCCGCCGTCGTGG--AGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725
| |||| ||| | || || | || | | || || | ||| ||||| |||
Sbjct 43580 GTA--CGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCAC 43637
Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785
|| ||||||||||| | | |||| |||||||| ||||| | |||| |||||||
Sbjct 43638 ACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTG 43697
Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845
|| || || |||| || || || |||||| ||||| ||||||||||| || || ||
Sbjct 43698 ATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAA 43757
Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904
|| ||| ||||| ||| | | | || || || |||||| | |||| || | ||
Sbjct 43758 GGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCT-TCTGCGCTTTGAC 43816
Query 221905 CGTCCTCTT-GACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963
|| | ||| || | |||||||| || | | || ||||| ||||||| |
Sbjct 43817 GGTGCGCTTCGAGCG-ACCCTCGGCCTCGTAGCGCTCG---TAGAGGCGCTCAAACTCGT 43872
Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023
||||||| ||| |||| || || ||| | ||| ||||| || ||||| ||
Sbjct 43873 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 43932
Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083
| | | |||||||| ||||||||| || || | ||| || || | ||||| || | |
Sbjct 43933 TCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCG 43992
Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143
||| ||||||| |||| ||| || | ||| || | |||||||| | ||| | ||
Sbjct 43993 CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGT 44052
Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203
|||| || || | || | || | || ||||| ||||||||||||||||| || ||
Sbjct 44053 GCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 44112
Query 222204 TCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTG 222262
| | ||| | |||||||| ||| || | || || | |||||| |||||||
Sbjct 44113 AGCGC-GCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTG 44171
Query 222263 GTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCACC 222321
||||| |||||||| ||| | | | | | | ||| | | |||||| |||||
Sbjct 44172 GTGCCGGCAATGTACGAGCCGGTGCCACGGATG-CAATGGATGTTGAGGCCGATGCCACC 44230
Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381
||| || ||||||||||| || ||||||| || || |||||| || || |||||
Sbjct 44231 GGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTC 44290
Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441
||||| | | | | || || || ||||| | ||| | | | || || |||||| ||
Sbjct 44291 ATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAA 44350
Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501
||||| || |||||| |||||||| ||||| || | ||||||||| | | |
Sbjct 44351 GAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGC 44410
Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561
|| |||||| | ||||| || | ||| || |||| ||||| |||||| |
Sbjct 44411 GCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACG 44470
Query 222562 CTC 222564
|||
Sbjct 44471 CTC 44473
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||||||||| ||||| || |||| |||||| | || ||| | ||| || || | ||
Sbjct 43049 GTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGG 43108
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || |||||| ||||||||||||| ||| ||||| ||||| |||||||
Sbjct 43109 CTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAG 43168
Query 221236 CAGCAGACTGTTGCGCAGTCCG 221257
|||||| |||||| || |||
Sbjct 43169 CAGCAGCGAGTTGCGAAGCCCG 43190
>seq1914
Length=69059
Score = 248 bits (274), Expect = 2e-60
Identities = 569/851 (67%), Gaps = 36/851 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | || ||||||||| || ||||| || ||
Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA-GAC---GAGCAGCATTTTCTCAA 25592
|||||||| | ||| |||| || | | | || ||| |||| || ||| ||
Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAA-CAAGCTGAACGACAATGAGCGCCACTTTATCTC 34715
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
| | ||| | || ||||| || || || |||||||| || |||||||| || ||| |
Sbjct 34714 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34655
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| |||||| ||| || ||||| || ||||||||||||||||| ||
Sbjct 34654 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34595
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA-TTACAGACGTC- 25770
|| || | ||||| ||| || | ||| || || || ||| ||||| |||
Sbjct 34594 GGAGAACATCCACTCGGAGACCTACTC---GCTGCTCAT--CG-ACACTTACATCCGTGA 34541
Query 25771 GCCG----AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826
||| || | || ||||||| ||| ||||| ||| || | ||||| |||
Sbjct 34540 GCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAA 34481
Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886
||| ||||| | ||||||| | | || | || || || | |||||| |||||
Sbjct 34480 GGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTCTGGT 34421
Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946
|| ||||| || || ||||||||||||||| || || || || | |||||||||||
Sbjct 34420 CGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCT 34361
Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006
|||| || || ||||||||| || || ||||||||||||||| | |||||
Sbjct 34360 CAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGA 34301
Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066
|||||| |||| || ||||||||||| |||| || ||||| ||| | | |
Sbjct 34300 GGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA---GCCAC---CTCAGGAGGCGCGC 34247
Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123
|| ||| || || || ||||||| ||||||||||| || ||||||| ||| |
Sbjct 34246 GCACCCAGACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGCGTTCCT 34187
Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183
| || ||||||| || |||||| ||||||||||
Sbjct 34186 GTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCAATACAT 34127
Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243
||||||||| ||||| | ||||| ||| ||| | |||| | || |||| |
Sbjct 34126 TGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAAC-CCAG----TGCACTACGGC 34072
Query 26244 T-AAC----CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298
| || ||||| ||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 34071 TCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTCTTT 34012
Query 26299 GAAAAGAGGGT 26309
|| || | |||
Sbjct 34011 GAGAAAAAGGT 34001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928821834312320
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