Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1175 114 8e-20 seq1233 102 5e-16 >seq1175 Length=12806 Score = 114 bits (126), Expect = 8e-20 Identities = 361/553 (65%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 170 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 229 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || |||||||| | || || Sbjct 230 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 289 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||||||||| || || | || | || || ||| || Sbjct 290 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 349 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || || | ||||| || || || || || || | ||||| ||| Sbjct 350 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTCGACGACGCTGAGGTCCAGTCT 409 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA--ACCATATATAGAAG 474626 || ||| || |||||||| |||| | || ||||| || ||| || | Sbjct 410 GACATGAAGCACTGGCCTTTCGAGGTTACCTCGGTCGGTGGCAAGCCCCAGATTCGCATT 469 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | ||||| | | | | ||||| || ||| | || || || |||||| | Sbjct 470 GAATACAAG--GGTGAGA--AGAAGACTTTCACTCCCGAAGAGATCTCATCCATGGTTCT 525 Query 474685 AGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||| ||| | || | |||| | || || || || | ||||| || Sbjct 526 CCTCAAGATGCGCGAGACTGCCGAG-GCTTACCTCGGTGGTACCGTCAAGGATGCTGTCG 584 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||||||| || || || || || || || || || || || || ||||| || | | Sbjct 585 TCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTATCA 644 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || ||||| || | ||||| || || || || || || ||||| | ||||| | Sbjct 645 TTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACG 704 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 705 GTCTCGACAAGAA 717 >seq1233 Length=330997 Score = 102 bits (112), Expect = 5e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||| ||||| || ||||| || || || || | || |||| | ||||| Sbjct 128922 ACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCG 128981 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || ||||| ||||| || || ||||| || |||||||||||||| |||||||||||||| Sbjct 128982 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 129041 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| |||||| || || || || | | ||| || ||||| || || Sbjct 129042 ATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTG 129101 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| |||||||| ||||| || Sbjct 129102 CCCGTGAGCGTCTTAACAAAAATCTG 129127 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||| || || || || || | ||||| Sbjct 128681 ACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 128740 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| || ||||| |||||||| || |||||||||||||| || Sbjct 128741 GCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCC 128800 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||||||| ||||| Sbjct 128801 TTCCTTGTCTTGGATCTT 128818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268094353982744