Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1519 214 2e-49 seq1914 145 9e-29 seq1552 125 9e-23 seq746 107 2e-17 seq1672 86.0 8e-11 >seq1519 Length=103858 Score = 214 bits (236), Expect = 2e-49 Identities = 282/393 (72%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||||||||| |||| ||| |||||||||||||||||||| | ||||||| Sbjct 44102 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 44161 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||||| | | || | || | | ||| Sbjct 44162 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 44221 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||||||||| | || || ||||| || ||||||||||| || Sbjct 44222 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 44281 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || |||||||||||| |||||||||| || || Sbjct 44282 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 44341 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||| || ||| ||||||| || ||| || Sbjct 44342 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 44401 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | ||||| ||||| Sbjct 44402 CTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATGCCGACAGCGAC 44446 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 ||||||||||||| |||||| ||||| |||| Sbjct 44447 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 44479 Score = 116 bits (128), Expect = 5e-20 Identities = 289/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||||||||| |||| ||||| || | |||| || ||||||| ||||||| Sbjct 43663 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 43722 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||||| || ||| | || ||| |||||| |||| | | Sbjct 43723 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 43782 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG---CGCGCGGCCCTNNN 1628338 ||| |||||| |||||| || |||| ||| || || || ||| |||| Sbjct 43783 CGAGGATGGCGTACCAGAGCTTCTGCGC---TTTGACGGTGCGCTTCGAGCGACCCTCGG 43839 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | | |||||||| ||| ||| || || Sbjct 43840 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGC 43899 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | ||||||||||||||| | | || | | | ||| ||||| Sbjct 43900 ACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATGAAGAG 43957 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| | ||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 43958 ATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTT 44017 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | ||| | |||||| || || | ||| ||||| Sbjct 44018 CTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAA 44077 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || |||||| ||| || Sbjct 44078 GGCACCGGGACGCTTGTTGCCACC 44101 >seq1914 Length=69059 Score = 145 bits (160), Expect = 9e-29 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | ||| ||||||||||| |||||||| Sbjct 34297 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34356 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||| Sbjct 34357 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34416 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||||||| || ||| | | || | | ||||||| | ||||| Sbjct 34417 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34473 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| | | | || ||| | || |||| |||| ||| || | || | Sbjct 34474 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34533 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || || || |||||||| || ||||| ||||||||| Sbjct 34534 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCC 34579 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | |||| || | | Sbjct 34578 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCT 34637 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||| || | | ||||||||| ||||| || || || |||| Sbjct 34638 GAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGA 34697 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || || ||| ||||||||||||||| | |||| | ||| |||||| Sbjct 34698 AGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGT 34757 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||||| | |||||| |||||||||| || ||||||||||| | Sbjct 34758 CGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCT 34817 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 34818 TGTACATTTGCCA 34830 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||||||| | |||| ||| ||||||||| |||| ||||| ||||||||||| | Sbjct 34090 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 34149 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| ||||||||||| || || | || |||| || ||| | ||||| || || || Sbjct 34150 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCAC 34209 Query 868918 GGCCTCGACGATGATCT 868934 ||||| |||||||| Sbjct 34210 AGCCTCAGTGATGATCT 34226 >seq1552 Length=102646 Score = 125 bits (138), Expect = 9e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| ||||| ||||| |||||| ||| |||||| |||| || || |||||||| Sbjct 97430 ATCGGTGGCACAGTGACATGCGTGATCCGCGGTGTGCCGTCAGGGCTGGGAGAGCCGTGT 97489 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| |||||||| ||| || ||||||||||| |||||||| |||||||| Sbjct 97490 TTCGACAAGCTCGAGGCCAAGCTGGCGCACGCCATGCTCAGCATCCCGGCAACCAAGGGG 97549 Query 19173 TTCGAGATTGGCAGCGGGTTTGCGGG 19198 |||||||| ||| ||||||| |||| Sbjct 97550 TTCGAGATCGGC-TCGGGTTTCCGGG 97574 Score = 109 bits (120), Expect = 7e-18 Identities = 264/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC 18141 ||| | |||||||| | |||||||||||| | || || || || ||| |||| ||| Sbjct 96620 TTTCGCGTCACCACGTACGGCGAGTCGCACTGCGCCTCGGTAGGTTGTATCGTCGATGGC 96679 Query 18142 GTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGA 18201 ||||| ||| ||||| |||| || | | |||||| ||| | ||| | || || || Sbjct 96680 GTGCCTCCGGGCATGGCACTCGCTGCGCACGACATTCAGACGCAGCTCTCACGTCGTCGG 96739 Query 18202 CCGGGCCAGGGCGCACTT-TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTC 18260 |||||||| | || | || | ||||||||| | || || || ||| ||||| || Sbjct 96740 CCGGGCCA-GTCGAATTTGACGACGCCGCGCGATGAAAAGGACCGTGTCGAGATCCAATC 96798 Query 18261 GGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGA 18320 ||| || |||| | ||||| ||| |||| ||| | | | || ||||| || Sbjct 96799 GGGTGTCGAACGCGGCGTGACGCTGGGCACGCCGATCGCCATGCTGGTACGCAACCAGGA 96858 Query 18321 CCAGCGGCCCGTCGACTATTCCGAC-ATGTGC-----AAGGTGCCGCGGCCCTCACACGC 18374 ||||| || |||||| | ||| || || | | || || || || ||||| Sbjct 96859 TCAGCGTCCACACGACTACACGGACGATACGCTGGATACGTATCCACGCCCTTCGCACGC 96918 Query 18375 CGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTC 18434 ||||| || || ||| |||||| | ||||||| |||||||| || || || Sbjct 96919 CGACTTTACGTATCTGGAAAAGTACAACGTCAAGGCAAGCTCGGGCGGTGGAAGGAGCTC 96978 Query 18435 TGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || || |||||| | || ||||| || ||||| Sbjct 96979 GGCTCGTGAGACCATTGGACGAGTCGCTGCGGGCGC 97014 >seq746 Length=35129 Score = 107 bits (118), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || ||||||| |||||| |||||||||||||||||||||| ||||| Sbjct 12223 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 12164 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| |||||||||| ||| || | | || |||||| | |||| | | | Sbjct 12163 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 12104 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || ||| | ||| || ||||| ||||||||||||||| |||| ||| | || ||| Sbjct 12103 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 12044 Query 507883 CGCCCTC 507889 | | ||| Sbjct 12043 CACGCTC 12037 >seq1672 Length=90251 Score = 86.0 bits (94), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 1573932 TGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCG 1573991 ||||| || |||| || |||||| || | | |||| ||||||||||||||||| Sbjct 70626 TGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCGAACTCAACGCT 70567 Query 1573992 TCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC----AA 1574047 || ||||| || || ||||| || || || || | |||||| ||| | | || Sbjct 70566 TCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACGTTTGCGCAAAA 70511 Query 1574048 G--AGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 | || ||| || || |||||| | || ||| | ||||||||||||||||| || | Sbjct 70510 GAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACGAGGCGGATAGT 70453 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 | || | || || || ||||| ||||| |||||||| Sbjct 70452 ATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGA 70412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106976876057026