Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1519 201 1e-46 seq1233 141 8e-29 seq1738 105 6e-18 seq335 93.3 4e-14 >seq1519 Length=103858 Score = 201 bits (222), Expect = 1e-46 Identities = 950/1474 (64%), Gaps = 70/1474 (5%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| ||| |||||| || ||||||| || Sbjct 43056 ACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAG 43115 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||| ||||| |||||| ||| | ||||||||||| |||| || || Sbjct 43116 CACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGC 43175 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | ||||| |||| || | |||||||| || ||||||||||| Sbjct 43176 GAGTTGCGAAGCCCGTG---CTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGG 43232 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || || | |||||| |||||||| ||| ||| ||||| ||| Sbjct 43233 TCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCG 43292 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||||| ||||| || || | |||| |||| | |||| || || || | Sbjct 43293 GCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGC 43351 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || |||||| || || || |||||||| ||| ||| Sbjct 43352 GTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACG- 43410 Query 138864 CATGCGG-AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 ||| | | ||| ||||||| || || || || || || || | |||| || || | Sbjct 43411 CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGT 43470 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCT--TCGATAGGATAATAGTTTACATCGATGATTTT 138980 | |||| || ||| || ||| || |||| ||||| ||||| | |||||||| || Sbjct 43471 GACGCATGTTGGAC--TTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTT 43528 Query 138981 GTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTT--AATCGTTCAAAATCGTATGT 139037 ||| | || | ||| || |||| | | ||| | | || | ||| ||||| || Sbjct 43529 GTTCAGGTTCTTGCA-GATGGCCTTGGCA--ACGCTGTGCAGACGCTTAAAGTCGTACGT 43585 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 ||| ||| || ||| | || || | |||||||| | |||||| Sbjct 43586 C------TTG--GTC-ACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCA 43636 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 ||| ||||| |||||||| ||||||| |||| || |||| |||||| || ||||| Sbjct 43637 CACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTT 43696 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 |||||| || | || | || ||||| || ||||| || || ||||| || || | Sbjct 43697 GATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAA 43756 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA- 139276 || |||| || || |||| ||| | ||| | || || ||||| | Sbjct 43757 AGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGT---ACCAG-----AGCTTCTGC 43808 Query 139277 --TTTGACG---CACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 ||||||| | | | || | ||| |||||| |||||||| || || Sbjct 43809 GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAAC 43868 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 |||| |||||||| ||| | ||| | | |||| || || |||||||||||||| | Sbjct 43869 TCGT-CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTC 43927 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC---GAACAGCAA 139445 ||||||| || ||| | | ||||||| ||||| || | ||| | || ||| ||| Sbjct 43928 GCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGC-- 43985 Query 139446 ATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAAC 139505 || ||||| | || ||| || ||| || || ||||| ||||| || Sbjct 43986 -TCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGAC 44044 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTG 139562 ||| | |||||||||||| | || || || | || || || ||| ||||| || Sbjct 44045 GTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTG 44104 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 ||||||| || ||| || ||||| ||||| | ||| ||| | | ||| | |||| Sbjct 44105 GTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT-GCTGA 44163 Query 139623 T-CCGTTGGTGCTACGG--ATGG--GA-CTGTTGCGAGCTCGGACGTCATGTACATTGAT 139676 |||||||||| ||| ||| || | | ||| | |||| | ||| | |||| Sbjct 44164 CACCGTTGGTGC--CGGCAATGTACGAGCCGGTGCCA---CGGATGCAATGGATGTTGAG 44218 Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATAC 139735 |||||| || ||| | ||||| || | | ||| || | | || ||||| || | Sbjct 44219 GCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTG-AGGGTATCGTAGATGC 44277 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | || ||| |||| ||| || || || ||||| ||||| || ||||| | | Sbjct 44278 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 44337 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 | ||||| || || ||||| ||||| || || | || |||||| | | || Sbjct 44338 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 44397 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 |||| |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||| Sbjct 44398 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 44457 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 | || ||| || || || ||| ||| | ||| Sbjct 44458 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGAT 44491 >seq1233 Length=330997 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| |||| ||||| || || || || ||||| |||||||| || || | Sbjct 129131 GATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTC 129072 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 129071 GGACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 129012 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| || || ||| | || || || || Sbjct 129011 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 128952 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || ||||| || ||| | ||||||||| | ||||| || Sbjct 128951 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGG 128904 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || |||||||| || | | Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 128842 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128783 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| || ||| | | |||| || || ||| Sbjct 128782 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128723 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| |||||||| || || |||||||| | || | || ||||||| Sbjct 128722 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGCG 128674 >seq1738 Length=83600 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || ||||| || || | | Sbjct 80034 GATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTC 80093 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 80094 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 80153 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | | || || || || Sbjct 80154 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAA 80213 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || |||| || || Sbjct 80214 CATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80261 >seq335 Length=223780 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24727 AACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACA 24786 ||| ||||| || ||||| || || || || || | ||||| | || | || || Sbjct 31448 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 31507 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||| || ||||| || || || || ||||| || || || ||||||| ||||| || Sbjct 31508 CAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 31567 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | | || || || ||||| || ||||||||||| || || Sbjct 31568 GCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCA 31627 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 | | ||| | || |||| || || Sbjct 31628 CCTTGTGCTCCGTCTGCGTGGTGG 31651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886476281840