Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1294 136 3e-27 >seq1294 Length=143989 Score = 136 bits (150), Expect = 3e-27 Identities = 216/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 |||| || || || ||||| | || || || | ||||||||| |||||| || | Sbjct 114288 TGAGATCGGTTTCGGGGTTCTTGCAGTCGCCGCAGAGGACAAACTTGTCGATGAAGCCGT 114347 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 ||||||| || | | ||| ||||||| |||||||| ||| | || ||||| | Sbjct 114348 CAAGCAGCTCGCGAAGACGGTCGGCATCGTGGGCACCGTTGACAATGTAACGATCGTTCT 114407 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 | | || | | ||||| ||||| |||||||| ||||| |||| |||||||| ||| Sbjct 114408 TCTCGTCAAACGAGGTTTGGGCGCCGAGCTCGCAGCCGAAAAACTTGGTCGGGTAGGTGG 114467 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 ||||| | || | || || || | ||||||| |||||| |||||||| |||| Sbjct 114468 GAGGACGGCTGAGGGAACGAGCAATGTCAGACATGTTGGGGATGACGGTCTTGATACCGT 114527 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 ||||||| || |||| ||||| || | ||||| ||| ||||||||| ||| Sbjct 114528 TGCCCTTGCCCTCGATCTTGGTCTGGAGCAGGGGCATGCGGTAACGGTAGAACTTGTCGT 114587 Query 34613 CCACATTGCG 34622 | |||| ||| Sbjct 114588 CGACATCGCG 114597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831647679154