Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1233 152 1e-31 seq909 102 2e-16 >seq1233 Length=330997 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||| ||||| ||||| ||||| || || || || || Sbjct 128676 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 128735 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| || || || || |||||||| || | || ||||| ||||| Sbjct 128736 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 128795 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || || || || || || || || ||| Sbjct 128796 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 128855 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||||||||| | |||||| ||||| |||||||| Sbjct 128856 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 128902 >seq909 Length=212 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || | ||| || || || || ||||| || || || || || || | | ||| Sbjct 4 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 63 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || | || || || || || || || ||||| Sbjct 64 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 123 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || || || || || || | || ||| Sbjct 124 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 183 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATAT 82804 |||||||| |||| ||||| ||||| || Sbjct 184 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981802317430542