Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1233 114 3e-20 seq909 89.7 1e-12 >seq1233 Length=330997 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||||||||| || || |||||| | ||||| || ||| ||| Sbjct 128899 CAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCGGAC 128840 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| ||| || || || Sbjct 128839 ACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAGCAG 128780 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| |||||| | |||||||| | ||| || | || |||||| | Sbjct 128779 CGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAACATT 128720 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || ||||||||| Sbjct 128719 CAGAAGGAATCCACTCTTCAC 128699 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || |||||||| || || || || ||| | ||||| || || ||| Sbjct 129127 CAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCGGAC 129068 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || ||||| ||| || || || Sbjct 129067 ACCATCGACAACGTCAAAGCCAA-GATCCAAGACAAGGAAGGCATTCCTCCTGATCAGCA 129009 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||| || |||||| | ||||| || | || | |||| |||||| | Sbjct 129008 GCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAACAT 128949 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||||||||||| ||| |||| || Sbjct 128948 TCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCG 128910 >seq909 Length=212 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || || || || || |||||||| | || ||||| ||| |||||| || Sbjct 209 TTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACAATC 150 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || || ||| || | || Sbjct 149 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTC 90 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| || || |||||| | ||||| || | || | | || |||||| ||||||| Sbjct 89 ATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAGAAG 30 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| || ||||||||||| ||| |||| Sbjct 29 GAGTCGACACTTCACCTTGTGTTGCGACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181790848967738