Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1519 179 4e-40 seq1233 89.7 5e-13 >seq1519 Length=103858 Score = 179 bits (198), Expect = 4e-40 Identities = 624/961 (65%), Gaps = 21/961 (2%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||| || ||| ||| |||| ||||||||| | ||| ||| Sbjct 43617 GCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCG 43676 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | |||| |||| ||| || || || | || | ||| ||||| || || ||| Sbjct 43677 GTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 43736 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA 147639 ||||| ||| | || ||| | || ||| |||||| || | || | ||| | || Sbjct 43737 GCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTA 43795 Query 147640 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCG 147696 || | ||||||| || | ||| | |||| |||||| ||||| |||||| Sbjct 43796 CCAGAGCTTCTGCGCTTTGAC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCG 43853 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||| |||||||| ||||| || || || |||| | || ||| Sbjct 43854 TAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCAC 43913 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| | ||| | | || | ||| || ||||| |||||||| || Sbjct 43914 ATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGT 43973 Query 147817 GCGTACATAAGATCGCGCGCTTTGCA----ATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 || || | || || ||||| ||| |||| || | ||||| || | Sbjct 43974 GCATAGAAGAGCTCACGCGC-ACGCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTC 44029 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 || | | ||| ||| | |||||| ||||||||||| | || | ||||| ||| Sbjct 44030 GAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACG 44089 Query 147933 C---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 | || || ||||||||||| | |||| | ||||||| || ||||| | |||||| | Sbjct 44090 CTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCAC 44149 Query 147990 CAGGCCGCTCGCAG-TGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | |||| | || | ||||||||| || | |||| | | || | | Sbjct 44150 AATGCCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAAT 44208 Query 148049 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 | | ||| | ||| ||||| || ||||| ||| || || || ||| | || Sbjct 44209 GGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTTGAGGGTA 44267 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||||||||| ||| | || | | || | || ||||| | | ||| Sbjct 44268 TCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGC 44327 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | | || || || ||| || || || ||||| ||||| | ||||| | Sbjct 44328 GGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGAC 44387 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 || | | |||||||| || ||| |||||||| | |||||| ||||| | ||||| Sbjct 44388 ATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACT 44447 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||||||||||||||| || || || || || | |||||| ||| | ||| | Sbjct 44448 CGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAA 44507 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 ||||| || ||| | || || | ||||| | || || | ||||| ||||||| Sbjct 44508 CGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCC 44567 Query 148408 G 148408 | Sbjct 44568 G 44568 >seq1233 Length=330997 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||| | || || ||||||||||| ||||| | Sbjct 128937 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 128996 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| |||||||| || || || || ||| | Sbjct 128997 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACG 129056 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||||| || | || || || || || || || Sbjct 129057 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 129116 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 129117 ACAAAAATCTGCAT 129130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || || || |||||||||||| || |||| | Sbjct 128709 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 128768 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| |||||||| ||||| ||||| |||||||| || || Sbjct 128769 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 128809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599415788080