Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1914 242 5e-58 seq1519 183 4e-40 seq1108 93.3 6e-13 seq746 91.5 2e-12 >seq1914 Length=69059 Score = 242 bits (268), Expect = 5e-58 Identities = 363/509 (71%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| |||||||| || ||||||||||| ||||| |||||||| |||||| ||| Sbjct 34837 GCAGATTTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCG 34779 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | ||| | |||||| ||||| |||| | |||||||| || | Sbjct 34778 ACCTTTCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTA 34719 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| || || || || || ||| || ||||| ||||| ||||||||| | Sbjct 34718 TCTCGCATGTGCTTGCGTTCTT-CGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTT 34660 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | || || || | ||||| |||| || ||||| ||||||||| Sbjct 34659 GAGCGTTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATC 34600 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || |||||||| ||| || || Sbjct 34599 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAG 34540 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || || | || ||| |||| |||| || | ||| || | | | ||| Sbjct 34539 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAG 34480 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 ||||||||||| | ||||||| | | || | | |||||| |||||||| || Sbjct 34479 GCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGT---GCCACTTTCGCCGAGCGTCTG 34423 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 |||| |||||||| |||||||||||||||||||||||| ||| | | ||||| ||| Sbjct 34422 GTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGG 34363 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| |||||||||||||| Sbjct 34362 CTCAAGAAGCGCGGTCTCATGCCCGGTCT 34334 Score = 89.7 bits (98), Expect = 7e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||||| || || || ||||| | ||| | |||| || | || || | Sbjct 34226 AGATCATCACTGAGGCTGTGGAAATTGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCG 34167 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||| |||||| || |||||||||||| ||||||| | | ||||||||| || Sbjct 34166 CGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAATACATTG-AGTATGTCGCCGATCG 34109 Query 1456641 CCTGCTCGCGGCGCTCGG 1456658 | |||| | ||||||| Sbjct 34108 CTTGCTGGTATCGCTCGG 34091 >seq1519 Length=103858 Score = 183 bits (202), Expect = 4e-40 Identities = 218/292 (75%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||||| ||| || ||| || |||| |||||||| || ||||| || |||| | Sbjct 44389 ATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCAC 44330 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 |||||| ||||||||||| || | |||||||| || |||||||| |||||||| Sbjct 44329 CCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCATCTAC 44270 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| ||||||| |||||||| | | || Sbjct 44269 GATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCT--CAACA 44212 Query 260075 CACAAGG--TGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGG 260130 || | | || | | | ||| | ||| | || |||||||||| | ||| |||||| Sbjct 44211 TCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAG--CAACGG 44154 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||||||||||||| ||||| || ||| |||| |||||||||||||||||| Sbjct 44153 CATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAG 44102 Score = 89.7 bits (98), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | | || | |||||| |||| || | ||| | |||| Sbjct 43803 AGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACA 43744 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAAC 262210 ||||||||| ||||| | ||||||||| ||||||| ||||| | | || | ||||| Sbjct 43743 AGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCA-AGTGCTCCAAC 43685 Query 262211 CTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT---C 262267 |||| ||||||||| || ||| | ||| ||||| ||||||||||| | Sbjct 43684 TTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGTGTGCAACCTCGCC 43625 Query 262268 TCGAGCGTGGCCCTGCCCAAGTT 262290 |||| | || ||||||| ||| Sbjct 43624 TCGA---TCGCACTGCCCACGTT 43605 >seq1108 Length=351692 Score = 93.3 bits (102), Expect = 6e-13 Identities = 170/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| |||||||||||||| ||||| || | | ||| Sbjct 245635 TACTCGACCTACATCTACCGTGTGCTCAAGCAGGTTCACCCTGACACTGGT-----ATC- 245582 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| | || ||||||| Sbjct 245581 TCGAACAAGGCCATGGCCATTCTTAACTCGTTCGTCCAGGACATCTTTGAGCGCATCGCA 245522 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| |||| || || | ||||||| || ||| |||| |||| Sbjct 245521 ACTGAGGC--GTCGAAGCTCGCTTCGTACAACAAGAAGTCGACCATCTCGTCGCGAGAGA 245464 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| || || ||||| || | | ||| || || ||| ||||||| |||| || | Sbjct 245463 TCCAGACGGCTGTCCGCCTCATTCTTCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAG 245404 Query 725137 GCACCA 725142 | |||| Sbjct 245403 GTACCA 245398 >seq746 Length=35129 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 1817472 ACCGACGAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGT 1817531 |||| ||| | |||| || | ||| |||| ||||||||||||||| ||||| || | Sbjct 12031 ACCGCAGAGCGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGCCTGAGGCGAGACAAT 12090 Query 1817532 CTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCAC 1817590 || | | | || | | |||| | |||||| || | ||| || ||| ||||| Sbjct 12091 CTGGCGCGGGACCCAGGCGATCTGCGAGAGCTCGGCACGGGTCTCTTCACTCTGTGGCAC 12150 Query 1817591 ATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTT 1817650 || | |||||||||||| |||||||||||||| ||||||| |||||| ||||| Sbjct 12151 GTGCAAGTTCATCTCGTCACCGTCAAAGTCGGCGTTGTAGGGAGGCGTGACACTGAGGTT 12210 Query 1817651 GA 1817652 || Sbjct 12211 GA 12212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177620418264436