Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1519 228 1e-54 seq1914 104 3e-17 >seq1519 Length=103858 Score = 228 bits (252), Expect = 1e-54 Identities = 899/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || || || ||||| || ||| |||| ||| || || || Sbjct 43088 GTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGA 43147 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || ||| ||||| || | || ||| | Sbjct 43148 AGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGC 43207 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| | | | || | ||| |||||||||| |||| | Sbjct 43208 CTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCA 43266 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || || || ||||| || || | | || || ||| || || ||||||| Sbjct 43267 ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCA 43326 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-T 111003 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| | Sbjct 43327 GCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT 43385 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | || | || | | || ||||| || || | | || || ||||||| || || Sbjct 43386 CGCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCC 43444 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || || Sbjct 43445 CTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGG 43504 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || |||| |||| ||| || || ||| | ||| | | || Sbjct 43505 ATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG 43564 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGAT 111240 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 43565 CAGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGAT 43621 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || | ||||| || ||| ||| || | | ||||||| | || || ||||| Sbjct 43622 CGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACA 43681 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || || Sbjct 43682 CAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 43741 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||||| || ||| | || | |||||||| |||||||| | ||| || || | ||| | Sbjct 43742 CTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAG 43801 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | || ||| | | || || || | || ||||| |||||||| ||||||| Sbjct 43802 CTTCTGCGCTTTG-ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGC 43860 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||||||| ||||| ||||| ||||| || || || || || | || | Sbjct 43861 GCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCG 43920 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || | ||| |||| ||||||||| || || || | ||| || | | | Sbjct 43921 ACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGA 43980 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 |||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 43981 AGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 44040 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || |||| ||||||||| |||| || | || | | || ||||| | Sbjct 44041 AGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGG---GACGCTTGTTGC 44097 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 44098 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 44157 Query 111774 --CTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATG 111829 |||| ||| || || || ||| ||||| || | | | ||||||| Sbjct 44158 TGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGG--TGCCACGGATGCAATGGATG 44213 Query 111830 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 | | || || || || ||| ||| ||||| ||||| | | || || | ||| Sbjct 44214 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 44273 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 || |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| Sbjct 44274 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 44333 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTT 112008 || ||||| || |||||||| || || | ||||| | || ||| || | ||||| Sbjct 44334 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAG-TACTTTTGCGACATAAG 44392 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | || ||||| | ||||||||||||| ||||| ||||| Sbjct 44393 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 44452 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 44453 GAGCATGTGCTGGGG 44467 >seq1914 Length=69059 Score = 104 bits (114), Expect = 3e-17 Identities = 227/333 (68%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTT 122546 ||||| | |||||||||||||| | | |||| || ||||||||||||||| | Sbjct 34109 CGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCG 34168 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || |||| || || | | |||| | |||||||| || || ||||| | | ||| Sbjct 34169 ACG-GGGATTGATTCGCACAGGAACGCCTTCTCAATTTCCACAGCCTCAGTGATGATCTT 34227 Query 122607 GTGGATAGTTTC--GGTA-GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAA 122663 | | | || || ||| | | | || | | | || |||||| |||||| Sbjct 34228 GAGCACCGTGTCTGGGTGCGCGCGCCTCCTGAGGT--GGCT-GAAGAGAAGGCAGGCAAA 34284 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 34285 GTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCAT 34344 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||||| |||||||| | ||| | || | | |||||| || ||||| ||||| ||||| Sbjct 34345 GAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTC 34404 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || |||||||| | || || |||||||| Sbjct 34405 GACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016471908800