Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1519 298 6e-76 seq1233 176 5e-39 seq1738 170 2e-37 seq909 161 1e-34 seq335 154 2e-32 seq1914 105 8e-18 >seq1519 Length=103858 Score = 298 bits (330), Expect = 6e-76 Identities = 1142/1756 (65%), Gaps = 73/1756 (4%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||| | ||||||||||| ||||| ||||||||||| | |||||| || Sbjct 42741 GTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCATCGAG 42800 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| ||| || || | | | ||||| || ||||| ||||| ||||| Sbjct 42801 GTGAGCTGTCCAAACGTCGGTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATA 42860 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || || ||||| || || || | ||| || || ||||| || || Sbjct 42861 AACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTC 42920 Query 80218 CGATACACCTTAC-GAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTC 80273 |||| ||| || || || |||||| | || || || | || |||| Sbjct 42921 TTGTACAGCTTCTTGATGCGG-TCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTG 42979 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | | || | || |||| | | ||| ||| | || ||| ||| || || Sbjct 42980 CGCGATGATACGGTTCTTCA-TCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCA 43038 Query 80333 CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTT 80391 | | ||| | || ||||| |||||||| || || ||| || | ||| Sbjct 43039 ACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTG 43097 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || |||||||| || |||||| || ||||||||| ||| || |||||| Sbjct 43098 GACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGC 43157 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAA 80508 ||||| | | || ||| || || || || |||||||| ||| | ||| | || Sbjct 43158 ATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGC--- 43214 Query 80509 TCTGACCAAAAAT-CAACCCCAACGCTGTGACCCC--ACATGTCGTGCTGCAAGATGCCC 80565 || | ||| || || ||| |||||||| ||||||||| |||||| ||| Sbjct 43215 TCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCC 43274 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| || || || || ||| |||||||||| ||| | | || |||||||| ||| Sbjct 43275 TGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCAC 43334 Query 80626 GA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 || |||| || || ||||| || ||| |||||||| | ||||| | || Sbjct 43335 GATCGCTCC---AGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA 43391 Query 80683 GCCTGTGGGTCG--TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 ||| | || || || |||| | ||||| ||||||||| | || || |||||||||| Sbjct 43392 GCC--TCGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAA 43449 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAA 80799 | ||||| ||||||| ||||| ||| |||| || | || | |||||| | || || Sbjct 43450 CACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGC-GCCTCCTCGACCGGATAG 43508 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCCGTGTAACATCATGAAG 80858 ||||| | ||||||| ||||||||| | || | | || | ||| || || Sbjct 43509 TAGTTAATGTCGATGATCTTGTTCAGGTT-CTTGCAGATGGCCTTGGCAACGCTGTGCAG 43567 Query 80859 TTTCTGAAAGTCGAA----TTGGTTCCCCT---TC-ACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||||| | ||||| | || || | || | || || | || Sbjct 43568 ACGCTTAAAGTCGTACGTCTTGGT--CACTGGGTCAATGAACGTGGGCAGTGCGATCGAG 43625 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || |||||||| |||||||| || | | | | |||||| ||| || || ||||| Sbjct 43626 GCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAG 43685 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || |||| || || || ||||| |||||||| |||| |||| ||||||||| Sbjct 43686 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 43745 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || ||| | ||| | || |||||| |||||||| ||||||||||| ||| | || Sbjct 43746 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 43805 Query 81091 CGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 |||| ||||| | | | | | | || |||||| | || |||| || Sbjct 43806 TGCGCTTTGACGGTGCGCTTCGAGCGA----CCCTCGGCCTCGTAGCGCTCGTAGAGGCG 43861 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | |||||| | || || | || | ||||||||||| |||||||| || Sbjct 43862 C-TCAAACTCGTCACCGTAGCAG-TCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 43919 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||||||| || | ||| || ||||||||| ||||| | |||||| || | Sbjct 43920 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAG 43979 Query 81265 AACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || || || || ||| ||| ||||||| | || ||||| ||||| ||||| || || Sbjct 43980 AAGAGCTCACGCGCA-CGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44038 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------ 81377 | || ||||| |||||||| || | || | || | | || | |||| Sbjct 44039 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTT 44095 Query 81378 GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||||||| |||||| || ||||| ||| || || || | ||| || | || || Sbjct 44096 GCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCC 44155 Query 81438 AT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 | ||||| |||||| || || | || ||| || || | || | | || || Sbjct 44156 GTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATG--GA 44211 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| | | ||| || ||| ||||| || | ||| || | Sbjct 44212 TGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGT 44271 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || ||||| || | |||||| || | ||| || || | ||| ||| Sbjct 44272 AGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGT 44331 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||||| ||||| || || || | ||||| | || || | ||||| | Sbjct 44332 GCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAA 44391 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || || ||| || || | ||||| || |||| ||| || |||| Sbjct 44392 GGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCA 44451 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 44452 TGAGCATGTGCTGGGG 44467 >seq1233 Length=330997 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||||| Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 128842 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128783 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| || || | ||||| || Sbjct 128782 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128723 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | |||||||| || || Sbjct 128722 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 128676 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 129130 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129071 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || || || || |||||||| || |||||||| || ||| Sbjct 129070 GACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 129011 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| ||||| || | || || || | ||||| || Sbjct 129010 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 128951 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| || || ||||| || |||||||| Sbjct 128950 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGG 128904 >seq1738 Length=83600 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 80035 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCG 80094 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 80095 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 80154 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 80155 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAAC 80214 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 80215 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80261 >seq909 Length=212 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 |||||||||||||| || ||||||||||| || || |||||||| ||||| || | Sbjct 212 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 153 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | ||| | ||||| || || |||||||||||||| || || || |||||||||||| Sbjct 152 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 93 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || |||||||||||||| || || || | || || || | ||||| || |||| Sbjct 92 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 33 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||| || || ||||| || || ||||| || Sbjct 32 AAGGAGTCGACACTTCACCTTGTGTTGCGACT 1 >seq335 Length=223780 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| |||||||| ||||| || | ||| | ||| | ||||| Sbjct 31449 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31508 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| || || || || |||||| Sbjct 31509 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31568 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| |||||||| || || || Sbjct 31569 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31628 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 31629 CTTGTGCTCCGTCTGCGTGGTGG 31651 >seq1914 Length=69059 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || || || || || || || || |||||| || | Sbjct 34430 AGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGA 34371 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| ||||| |||| || |||||||| |||| Sbjct 34370 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCT 34311 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 | || |||||||| || ||| || ||||| | || || ||||||||||||| Sbjct 34310 CGCGTGACGAGGGTCTTCACACGGACTTTGCC--TGCCTTCTCTTCAGCCACCTCA 34257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296299075360