Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1233 129 1e-24 seq1738 107 4e-18 seq909 98.7 2e-15 seq335 84.2 5e-11 >seq1233 Length=330997 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || |||||||| || |||||||| |||| | |||| || ||||| Sbjct 128922 ACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCG 128981 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| || | |||||| || | | || |||||||| ||||| Sbjct 128982 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 129041 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || |||||| | || | | |||| || ||| ||||| |||||||| || ||| Sbjct 129042 ATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTG 129101 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||| || || | |||||| Sbjct 129102 CCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 >seq1738 Length=83600 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | || || || | Sbjct 80241 CAAG-TGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGA 80183 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | || || || ||||| || || | Sbjct 80182 GCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 80123 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| ||| || || ||||| || || || | Sbjct 80122 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTAC 80063 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| || |||| |||||| || Sbjct 80062 CCGTGAGGGTCTTGACAAAGATCTGCATCTT 80032 >seq909 Length=212 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || ||||| || ||||||||||| || | | || | || ||||| Sbjct 10 ACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCA 69 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || | ||||||||| | | ||| || ||||| || || Sbjct 70 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGG 129 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || |||||| | || | |||| ||| ||| || ||||| || || || ||| Sbjct 130 ATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTG 189 Query 152076 CCCGTGAGAGTCTTCACGAAGA 152097 || || |||||||| || |||| Sbjct 190 CCGGTCAGAGTCTTGACAAAGA 211 >seq335 Length=223780 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || || || || || || ||||||||||| || | | || | ||||| Sbjct 31637 GAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATC 31578 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | || || ||||| || Sbjct 31577 CTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTC 31518 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | | |||| || ||| || ||||| ||||| || Sbjct 31517 CTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGT 31458 Query 152072 TTTGCCCGT 152080 || || || Sbjct 31457 CTTACCTGT 31449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153791558575238