Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2563 390 1e-103 seq2363 134 1e-26 seq1585 120 3e-22 seq999 114 1e-20 seq2104 102 8e-17 >seq2563 Length=74346 Score = 390 bits (432), Expect = 1e-103 Identities = 435/574 (76%), Gaps = 15/574 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 34835 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34776 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | |||||||||| |||||||| || ||| | Sbjct 34775 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34716 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || ||||| || || ||||| || || || |||||||||||||| || || |||||| Sbjct 34715 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGT 34656 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||| || |||| |||||||| || ||||||||||| || |||||| ||| Sbjct 34655 TTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 34596 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC----GTGCGCTCTTC 116928 |||||| | |||||||| | || ||| ||||||||||| ||| ||| || || Sbjct 34595 GAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGC-CTGA 34537 Query 116929 GGAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | ||| || ||||| ||||| ||||||| || ||| |||||| |||||| Sbjct 34536 GCAGCGTGAATATCTGTTTG----ACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGG 34481 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 |||| ||||| || || |||||| || || || | ||| | |||| |||||| ||||| Sbjct 34480 CCGACTGGGCTCTTCGATGGATCAGCGACA-AGCGTGCCACTTTCGCCGAGCGTCTGGTC 34422 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || |||||||||||| |||| || |||||| |||||| | || || |||||| Sbjct 34421 GCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTC 34362 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| ||||| ||||||||||| || || ||| ||||||||||||||| | |||||| Sbjct 34361 AAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAG 34302 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| || ||||||||||| | || |||| Sbjct 34301 GGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA 34268 >seq2363 Length=266066 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||||||||| ||||| || |||| ||||| || | Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 64253 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 64195 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 64194 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 64135 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | ||||| || || || ||||| Sbjct 64134 CATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCG 64099 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| |||||||| |||| ||||| | | Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 64025 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 63967 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 63966 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 63907 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||| |||| || || Sbjct 63906 CATTCAGAAGGAATCCACTCTTCA 63883 >seq1585 Length=212 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || || || || || || || ||||| || |||||| | || || || | |||||| Sbjct 1 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 60 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | |||||| || || | ||||| ||||| |||||| | |||||||| || Sbjct 61 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 120 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || || ||||| || |||| ||||| ||| ||||||||||||||| Sbjct 121 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 180 Query 40876 AAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| | || || || || |||||||| Sbjct 181 AAGGAGTCGACACTTCACCTTGTGTTGCG 209 >seq999 Length=205769 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || |||||||| |||| || || | Sbjct 80228 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80287 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| || | ||| Sbjct 80288 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80347 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || |||| || || || |||||| Sbjct 80348 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80407 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || ||||| Sbjct 80408 AACATCCAGAAGGAGTCTACCCTGCA 80433 >seq2104 Length=129475 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||| ||| | || || || || | |||| | | | | |||||| Sbjct 31487 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31546 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || ||| | |||||||| || || |||| ||| || || Sbjct 31547 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31606 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| |||||||||||||||||||| | || || || Sbjct 31607 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31666 Query 40894 CTAGTG 40899 || ||| Sbjct 31667 CTTGTG 31672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201843553200