Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2275 141 2e-28 seq2419 84.2 5e-11 >seq2275 Length=103831 Score = 141 bits (156), Expect = 2e-28 Identities = 399/611 (65%), Gaps = 9/611 (1%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| || ||| | ||| || | |||||| ||| || || Sbjct 44554 TTCAAGACGCTCGAGCGTTCCTATTTGCTCCGCATCAACGGCAAGGTCGCAGAGCGTCCC 44495 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | |||||||| |||||||| || ||| | ||||| ||||||| || Sbjct 44494 CAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCCATC 44435 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || | | || || ||| | || |||||||||||| Sbjct 44434 GAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAAC 44375 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||||||| || ||||| |||||||| ||| || ||||| | || ||||| Sbjct 44374 GCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCG 44315 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGC 249129 |||||||||| || || || || | |||| || | ||| || || || || Sbjct 44314 ATCGACGGCATCTACGATACCCTCA---AGACTTGTGCCATGATCTCCAAGACGGCCGGT 44258 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| ||| | || |||||| | | || |||||||| || || || Sbjct 44257 GGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAAC 44198 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || ||||| | || || || ||| | || || ||| | ||| || | | | || Sbjct 44197 GGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTC 44138 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 |||||| || | || || | || || || || | ||| |||||| | Sbjct 44137 GACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCATGGCACTCG 44078 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 || | || |||||||| ||| || |||||| |||| || ||| || | |||||| Sbjct 44077 GACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGCGTGCGCGT 44018 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGC 249426 || |||||||| | || ||||| | || | |||||| | ||| || ||||| Sbjct 44017 GAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGCAGAACGGC 43958 Query 249427 GATTGGACGCT 249437 || ||| |||| Sbjct 43957 GACTGGTCGCT 43947 >seq2419 Length=90121 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 115383 AACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGA 115442 ||| || | | ||| ||| || ||||| | ||| || ||||||||||||||| || Sbjct 70269 AACCTTTGCATACCGTAAGATGGCACAGCGCGACTGGATGGGTTCGATGATTTTGTTGCT 70328 Query 115443 GTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAG 115502 | ||||| | | | ||||| || || ||||||| | |||||| ||| |||||| Sbjct 70329 CTGATTGCAAGCGAAGCAGAACCTGGTAGTATTCGAGTAGATCTCCATGGTCCTTCGCAG 70388 Query 115503 CGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 |||||| ||| |||| ||||| || ||||||||||| | || ||||| Sbjct 70389 CGCCTGTTGCGCAGCAGGAGTCATACTATCCGCCTCGTCGAGGATGATGATCTT 70442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073729323181760