Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2275 122 1e-22 seq2563 96.9 5e-15 >seq2275 Length=103831 Score = 122 bits (134), Expect = 1e-22 Identities = 447/697 (64%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | |||||| || |||| | || || | ||||| Sbjct 43923 CCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 43982 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 ||||||||||| | ||| || || ||| || | || | | | ||||| ||||| Sbjct 43983 AAGAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 44041 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||||| || ||||||||| | | | || | ||||| ||||| | ||| || Sbjct 44042 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 44101 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 44102 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 44161 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 || | | ||| || | ||| || ||| ||| ||||| |||| || || || Sbjct 44162 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 44221 Query 66311 ACTTGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 | |||| || ||| ||| || || || || || ||| | || ||||| | Sbjct 44222 GGTGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCA 44277 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 || || || | ||||| |||||||| || || |||||| ||||| ||| | Sbjct 44278 TGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAA 44337 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | || || || | || | | || || || || || | ||||| || |||| Sbjct 44338 GGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGT 44397 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 | ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 44398 GGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGC 44457 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 || || || || ||||| ||||| | ||||||||| || | || ||| |||| || Sbjct 44458 CGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGT 44517 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | || | ||| ||||| || | || || || || ||| ||||||| |||| Sbjct 44518 TGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGT 44577 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 | |||||||| || || |||||| ||| | ||||| Sbjct 44578 CACGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 44614 >seq2563 Length=74346 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | || | |||||||| |||||||| |||||||| || || Sbjct 34293 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34352 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || || || || ||||| || || || || || || || || || Sbjct 34353 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34412 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGC 36348 ||||| || | || | ||| | || ||||| |||| ||||| |||| Sbjct 34413 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34472 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||| |||||||||| || || || || ||||| | || | ||| ||||| Sbjct 34473 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATA 34526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658150627803800