Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2363 113 4e-20 seq1585 107 2e-18 seq2563 84.2 2e-11 >seq2363 Length=266066 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| ||| |||||||| |||||||| || ||| | || | | Sbjct 64099 CGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 64158 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| |||||||| |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 64159 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 64218 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||| || || | || | Sbjct 64219 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATG 64278 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||| || || || || ||||| Sbjct 64279 GTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || || || || |||||||| || || Sbjct 63858 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 63917 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||||||||| || || ||| |||| ||||| |||||||| ||||| Sbjct 63918 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 63977 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 63978 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 64037 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | ||| || || || || |||||| Sbjct 64038 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 64086 >seq1585 Length=212 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| || ||||| || || ||||| || || | |||| | Sbjct 209 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 150 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||||||| |||| ||||| ||||| || || || || || || ||| Sbjct 149 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 90 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||||| | ||||||||||| ||| | | Sbjct 89 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 30 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATAT 139758 ||||||||||||| || || || || || Sbjct 29 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 1 >seq2563 Length=74346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665 |||||||| ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 34445 GCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGC 34386 Query 52666 AGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAG 52724 || || | || || | |||| || | || | | |||||||| |||||||| Sbjct 34385 TCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTC 34327 Query 52725 CAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 ||||||| | || ||||| ||||| || | ||||| || ||||| || Sbjct 34326 CAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTG 34279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047288844000