Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2275 134 2e-26 >seq2275 Length=103831 Score = 134 bits (148), Expect = 2e-26 Identities = 473/731 (65%), Gaps = 12/731 (2%) Strand=Plus/Plus Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999 || || |||||||| || | ||| | | ||| ||||| || || || || ||||| | Sbjct 43890 CGCTCAAACTCGTCACCGTA-GCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAG 43948 Query 72000 TGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 ||||| || || | | | || | ||||| ||||||||||| | ||| || || || Sbjct 43949 CGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-AT 44007 Query 72060 A-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 | || || || | | | |||||| ||||| ||||| || ||||||||| Sbjct 44008 AGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACT 44067 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | || || ||||| ||||| | ||| || || | | || || || ||||| | Sbjct 44068 CAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGC 44127 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | ||||| || | ||| | || ||||| || | || | | ||| || | ||| || | Sbjct 44128 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 44187 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT- 72297 || |||| ||||| |||| || || || || |||| || || ||| ||| Sbjct 44188 TGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGAT---GC-AATGGATG 44243 Query 72298 ---AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 || || || || || ||| | || ||||| | || || || | ||||| ||| Sbjct 44244 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 44303 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 ||||| || || |||||| ||||| ||| || || || || | || | | Sbjct 44304 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 44363 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 || || || || || | ||||| || ||||| ||||| | |||| |||| || Sbjct 44364 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGG 44423 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 ||||||||||| || || || || ||| || || || || ||||| ||||| Sbjct 44424 TTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATG 44483 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||| ||||| || | || ||| |||| || || | ||| ||||| || Sbjct 44484 AGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCG 44543 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | || || || || ||| ||||||| ||||| |||||||| || || |||| | | Sbjct 44544 AGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCG 44603 Query 72655 AGTTTATCCTT 72665 || | ||||| Sbjct 44604 AGCTGGTCCTT 44614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671116590998200