Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2363 131 4e-25 seq2104 93.3 1e-13 >seq2363 Length=266066 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | || || ||||||||||| || ||||| || || |||| |||||||| Sbjct 64104 TACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTC 64163 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||| || || || | ||| ||||||||||| || ||||| || || || Sbjct 64164 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 64223 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCT 104528 ||||| || || || || || | ||| || | ||| || || || || ||||| |||| Sbjct 64224 GATCTTGGCCTTGACGTTGTCGATGGTGTC-CGAGGACTCGACTTCGAGAGTAATGGTCT 64282 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| |||||||| Sbjct 64283 TGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || ||||| | ||| ||||| || || || || Sbjct 63889 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCG 63948 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||||||||| || ||||| || || || ||||| || || Sbjct 63949 GCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 64008 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || ||||| || || || || Sbjct 64009 ACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTC 64068 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 64069 TTGACAAAGATCTGCAT 64085 >seq2104 Length=129475 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | || || || || || || || Sbjct 31659 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCG 31600 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||||||||| || || Sbjct 31599 GCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 31540 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | ||| || ||||| || ||||| |||||||| || |||| Sbjct 31539 ACATTGTCGATGGTGTC-CGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 31481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151358642573060