Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2275 125 9e-24 seq2563 114 2e-20 >seq2275 Length=103831 Score = 125 bits (138), Expect = 9e-24 Identities = 448/697 (64%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | |||||| || |||| | || || | ||||| Sbjct 43923 CCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 43982 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 ||||||||||| | ||| || || ||| || || || | | | ||||| ||||| Sbjct 43983 AAGAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 44041 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || ||||||||| | | | || || ||||| ||||| | ||| || Sbjct 44042 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 44101 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 44102 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 44161 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | | ||| || | ||| ||||| | ||| ||||| |||| || || || Sbjct 44162 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 44221 Query 63467 ACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTA 63522 || |||| || ||| ||| || || || || || ||| | || ||||| | Sbjct 44222 GGTGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCA 44277 Query 63523 ATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 || || || | || || ||||| || || || ||||| ||||| ||| | Sbjct 44278 TGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAA 44337 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 | || || || | || | | || || || || || | ||||| || |||| Sbjct 44338 GGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGT 44397 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 | ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 44398 GGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGC 44457 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 || || || || ||||| ||||| | ||||||||| || | || ||| |||| || Sbjct 44458 CGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGT 44517 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | || | ||| ||||| || | || || || || ||| ||||||| |||| Sbjct 44518 TGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGT 44577 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 | |||||||| || || |||||| ||| | ||||| Sbjct 44578 CACGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 44614 >seq2563 Length=74346 Score = 114 bits (126), Expect = 2e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | || || |||||||| |||||||| |||||||| || || Sbjct 34293 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34352 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 34353 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34412 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33494 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 34413 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34472 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 34473 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 34532 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 34533 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 34592 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 34593 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 34652 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || | | || || || || || || || || || || ||||| | || Sbjct 34653 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 34712 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 33790 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 34713 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 34771 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 34772 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 34831 Query 33851 AGAT 33854 | || Sbjct 34832 AAAT 34835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622926214466200