Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2363 105 6e-18 >seq2363 Length=266066 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | ||||| ||||||||||| || Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 64253 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 64194 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| |||||||| | | ||| || ||| || ||| Sbjct 64193 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 64134 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || || |||| Sbjct 64133 ATTCAGAAAGAGTCGACGCTTCA 64111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || || ||||||||||| | Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 64025 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 63966 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| |||||||||| | | | || || ||| Sbjct 63965 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 63906 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || |||| || || Sbjct 63905 ATTCAGAAGGAATCCACTCTTCACTTGGT 63877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429921878617725