Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2275 244 1e-59 seq2563 134 1e-26 seq2363 113 4e-20 seq999 113 4e-20 seq2104 98.7 9e-16 seq1585 89.7 5e-13 >seq2275 Length=103831 Score = 244 bits (270), Expect = 1e-59 Identities = 991/1522 (65%), Gaps = 67/1522 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | |||||| || | || | ||| ||||| | || Sbjct 43080 TTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGC 43139 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||| ||||||||| ||| |||| ||||| ||||| |||| | Sbjct 43140 TCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGC 43199 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 43200 AGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCAC 43259 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC----GCTGGCGGG 145293 || | |||| | || ||||||||||||||||||| |||| || |||| | Sbjct 43260 AGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAG 43319 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG----GCGAGCTCGCAAC-TCGCC 145348 | || | | | ||| ||||| || || || |||||||| |||| Sbjct 43320 CCGGCGT----ACGTCTCGTAGCTGCC----GTGCTGCTCAGCCAGCTCGCACGATCGC- 43370 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 43371 TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCC 43430 Query 145409 CTCTCGTACGGCATGCGC-AGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| ||| | | | | | || ||||| || || ||||| | || | || Sbjct 43431 GACTCAAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCC 43489 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||| | | | |||| ||||| ||||| ||| ||| Sbjct 43490 GATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTC 43549 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAA 145583 ||| || || |||| ||| | ||| | |||| | || ||||| | ||| || Sbjct 43550 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTT---AA 43605 Query 145584 AGTCAAACCGA---GCCTC---GTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||| || | | | ||||| || || | | || ||||||| || | Sbjct 43606 AGTCGTACGTCTTGGTCACTGGGTCAATGA--ACGTGGGCAGTG----CGATCGAGGCGA 43659 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 || || |||||| ||| |||| ||||||| | | |||||||| ||||| ||| Sbjct 43660 GGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGG 43719 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || || | |||| ||||||||||| | Sbjct 43720 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACA 43779 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTG 145815 | ||| | || ||| ||||| ||| | ||| | ||| || || || | ||| Sbjct 43780 GGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG--CGTACCAGAGCTTCTG 43837 Query 145816 CGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| || ||| ||| |||| ||||| | ||||| | |||||| ||||| Sbjct 43838 CGCTTTGACGGTGC-GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 43896 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| |||| || || || |||| |||||| ||||| |||||||| Sbjct 43897 ACTCGTCACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGT 43956 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||| | ||| | || ||| || | ||| |||||||| || || || | | | Sbjct 43957 CGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCT 44016 Query 145995 CGCGCGCTTTGCAA-TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGA 146051 | ||||| ||| ||||| || ||| | || || | || | ||| | ||| Sbjct 44017 CACGCGCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG-CAGGTCGAGGA-ACTCAAAGA 44073 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCT 146108 ||||| |||||| |||||||| || | || | ||| || || ||| ||||||| Sbjct 44074 CGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCT 44133 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 |||| |||| || | ||||||| |||||||| | ||||||| | | |||| || | Sbjct 44134 GGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA 44193 Query 146169 CGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGA 146228 | ||||| || | || | |||| | || | |||||| | || | ||||| Sbjct 44194 CACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGA 44253 Query 146229 GACCGCCG-CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| |||| |||||| || ||| || ||| ||| || |||||||||||||| Sbjct 44254 TGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTT-GAGGGTATCGTAGATGCCGTC 44311 Query 146287 AAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 || | ||| |||| ||| | || |||||||| | | ||||| ||| || Sbjct 44312 GATCGAGTCATC-CTTC--ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGT 44368 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||| | ||| || ||||| ||||| ||| | ||| | || Sbjct 44369 ACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTA 44428 Query 146404 CGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 ||| ||||| ||| ||| || |||| | ||| || ||||| | |||||| |||||||||| Sbjct 44429 CGTCTCGATGGCGCTCTCGA-TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 44487 Query 146463 TGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 |||| ||||| ||||| || || | || || | ||||||| ||| || | Sbjct 44488 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCG 44547 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 | ||| | |||||||| ||||| Sbjct 44548 TCTTGAAGCCGAAAAAGTTGTA 44569 >seq2563 Length=74346 Score = 134 bits (148), Expect = 1e-26 Identities = 329/488 (67%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | || || ||||||||||||||| Sbjct 34486 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 34427 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| || ||||| || |||||| ||||||| || ||| || ||| | ||||| | Sbjct 34426 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 34367 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | |||||||||| || ||||| ||||||||| || ||||| Sbjct 34366 GGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34308 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||| || || ||||||||||| || || || || | | | || || | Sbjct 34307 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT---TCAGCCACCT-CAGGAGGCG 34252 Query 46339 CTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | || ||| ||||| ||||| | || ||| ||||| |||| || ||||||| ||| Sbjct 34251 CGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTT 34192 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACT 46456 | | || | |||| || || | || |||||| ||| || |||||| | | Sbjct 34191 CCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAAT 34133 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACG 46516 |||| |||| ||| || || || |||| || ||| | || ||| | ||| Sbjct 34132 ACATTGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACT---ACG 34076 Query 46517 CGCGCAA----TCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 || | | ||| ||||| ||||||| |||||| || |||| ||||| || || || Sbjct 34075 -GCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTC 34017 Query 46573 TTCGAAAA 46580 || || || Sbjct 34016 TTTGAGAA 34009 >seq2363 Length=266066 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| || | || | |||||||| || ||||||||||| ||| Sbjct 64087 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 64146 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 64147 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 64206 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 64207 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 64266 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || || || || || || |||||||| Sbjct 64267 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | || || ||||| ||||||||||| || Sbjct 63858 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 63917 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 63918 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 63977 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 63978 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 64037 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 64038 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 64085 >seq999 Length=205769 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 80457 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80398 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 80397 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80338 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 80337 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80278 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || || || |||||||| Sbjct 80277 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80231 >seq2104 Length=129475 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||| ||||| || |||||||| || Sbjct 31689 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 31630 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 31629 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 31570 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 31569 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 31510 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 31509 TCAAGGGTAATGGTCTTACCTGTT 31486 >seq1585 Length=212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| ||| | || | ||||||||||| || |||||||| || | ||||| | Sbjct 209 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 150 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || || |||| | |||||||||||| || ||||| || || ||| Sbjct 149 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 90 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| ||||| | || | ||| | Sbjct 89 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 30 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAAT 131228 || || ||||| ||||| || || || || Sbjct 29 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996899068800