Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2275 131 2e-25 seq2563 93.3 5e-14 >seq2275 Length=103831 Score = 131 bits (144), Expect = 2e-25 Identities = 451/700 (64%), Gaps = 10/700 (1%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | |||||| || |||| | || || | ||| Sbjct 43920 AGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTC 43979 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63138 || ||||||||||| | ||| || || ||| || || || | | | ||||| || Sbjct 43980 ATGAAGAGATCAGGCACCCAGAGTGC-ATAGAAGAGCTCACGCGCACGCACCTCCTCCTT 44038 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 ||| ||||| || ||||||||| | | | || || ||||| ||||| | ||| Sbjct 44039 TCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTA 44098 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 || || | | || || || ||||| || ||||| || | ||| | || ||||| || Sbjct 44099 AATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTT 44158 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 | || | | ||| || | ||| || ||| ||| ||||| || | || || Sbjct 44159 GAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGA 44218 Query 63319 TCCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGA 63374 || || |||| || ||| ||| || || || || || ||| | || |||| Sbjct 44219 GCCGGTGCCACGGATGC----AATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGA 44274 Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | | || || || | ||||| |||||||| || || |||||| ||||| ||| Sbjct 44275 TCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAA 44334 Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 || || || || | || | | || || || || || | ||||| || | Sbjct 44335 CAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGG 44394 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 |||| ||||| | |||| || | || ||||||||||| || || || || ||| Sbjct 44395 CGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCT 44454 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 || || || || ||||| ||||| | ||||||||| || | || ||| |||| Sbjct 44455 GGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGC 44514 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 ||| || | ||| ||||| || | || || || || ||| ||||||| | Sbjct 44515 CGTTGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGA 44574 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 |||| |||||||| || || |||||| ||| | ||||| Sbjct 44575 AGTCACGTTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 44614 >seq2563 Length=74346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 352/548 (64%), Gaps = 16/548 (3%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||| | || | |||||||| |||||||| |||||||| || || Sbjct 34293 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34352 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 ||||| || ||||| || || || || ||||| || || || || || || || || || Sbjct 34353 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34412 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 32851 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 34413 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34472 Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911 ||| |||||||||| || || || || ||||| | || | ||| ||||| || Sbjct 34473 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATA----TT 34528 Query 32912 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 32967 | | || | || ||||| || || | || || | ||||| || | Sbjct 34529 CACGCTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGA 34588 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 |||| || || || || || ||||||||||| | |||||||| ||| ||||| | Sbjct 34589 TGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCG 34648 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 || || || || | | || || || || || || || || || || ||||| | Sbjct 34649 AACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAA 34708 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATA 33143 ||||| ||||| | || | || ||| || || || ||| || | || Sbjct 34709 GCACATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGG 34767 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 || || || | || | || || | ||||| || || ||||| ||||| || ||||| Sbjct 34768 TCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATT 34827 Query 33204 TTCCAGAT 33211 | ||| || Sbjct 34828 TGCCAAAT 34835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610654522000