Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2363 194 3e-44 seq999 167 4e-36 seq2104 127 4e-24 seq2275 105 1e-17 seq367 98.7 2e-15 >seq2363 Length=266066 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||||||| | ||| ||||| |||||||| || ||||| || |||||| Sbjct 64087 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 64146 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 64147 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 64206 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 64207 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 64266 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || |||||||| ||||| || || |||||||| Sbjct 64267 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || ||||| || || || ||||| || || || Sbjct 63859 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 63918 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 63919 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 63978 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 63979 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 64038 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 64039 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 64085 >seq999 Length=205769 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || || Sbjct 80457 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80398 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 80397 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80338 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 80337 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80278 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 80277 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80231 >seq2104 Length=129475 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || || ||| Sbjct 31689 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 31630 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 31629 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 31570 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 31569 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 31510 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 31509 TCAAGGGTAATGGTCTTACCTGT 31487 >seq2275 Length=103831 Score = 105 bits (116), Expect = 1e-17 Identities = 219/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||| ||||| | || |||| |||| ||||||| ||| | ||| || | Sbjct 43665 CACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCAC 43724 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACG 31820 |||| |||||| || ||| || |||| ||| || |||||||| || | | Sbjct 43725 TTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATG 43784 Query 31821 TAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTG 31880 |||| ||||||||||| |||| | || || || | ||||| | |||||||| Sbjct 43785 AAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG 43844 Query 31881 ACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTG 31940 ||| ||||| || ||||||| ||||||||| || ||| ||| |||| | Sbjct 43845 ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA 43904 Query 31941 CCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCG 32000 || || |||| |||||| || ||||| |||||| | ||||||||| || | | Sbjct 43905 CCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTC 43964 Query 32001 GCCTCTACTCGCTTCATGAACAGGTC 32026 ||| || | ||||||||| || || Sbjct 43965 TGCTCGACCCTCTTCATGAAGAGATC 43990 >seq367 Length=48297 Score = 98.7 bits (108), Expect = 2e-15 Identities = 359/549 (65%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA-TGAG 225516 |||||||| ||||||||||||| | | || | ||| ||||| || | ||| Sbjct 25908 GAGTCGTGCGACACAATGATGGCGGTGGCAGTCTTGAGGTTGACGAGGTA-GTCAGTGAT 25850 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| |||||| ||||||| |||||| ||||| || || || |||| ||||| || Sbjct 25849 CCACTTGACGTTGACAACGTCCAAGTGGTTGGTAGGCTCATCGAGCAGCAAAATGTCGGC 25790 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | | |||||||| || | || | | |||||| ||||| || || || || | | Sbjct 25789 CTTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCAGAGAGACCGGC 25730 Query 225637 GATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAAT 225693 ||| | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 25729 GATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTAGCGACA-- 25675 Query 225694 GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA--TCATATACG 225751 || |||| | | | || | ||| | | |||| | || | ||| || || Sbjct 25674 GC-CTCGTCGCGGGT-CATGCTGAGACGCTCG--TCGG-CAAG-GATAAACTCGAGAACA 25621 Query 225752 GTCATGTCCGAGAC----AGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| |||| ||| |||| | |||||| ||||||||| || |||| || Sbjct 25620 GTCATG----AGACCCTCAGAGCCGTCCAAGTCGTGCTCCACGTACCAGGTTCGGACCTC 25565 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 | | |||||||| || | |||||| || | || || || | |||||| ||| Sbjct 25564 ATCGGGCGAAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCGCGCATGAGGGTAGACTT 25505 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || | ||||| ||||| ||| ||||| | | || ||||||| | ||| | Sbjct 25504 TCCGGAACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGGCGGAGAGTGGC 25445 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 | ||| || || || ||| |||| ||||| || ||||||| || | ||| ||||| || Sbjct 25444 AGTGTTGAGCAGAATTTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAGAGGTCTTC 25385 Query 225988 ACCCTCCTC 225996 ||||||||| Sbjct 25384 ACCCTCCTC 25376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921591352845400