Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2363 140 8e-28 seq1585 122 2e-22 seq999 105 2e-17 seq2012 89.7 1e-12 >seq2363 Length=266066 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| | ||| || |||| ||| ||||| || || || ||||||| | Sbjct 64087 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 64146 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || |||||||| |||||||| ||| | || Sbjct 64147 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 64206 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || ||||| || || | || || || ||| Sbjct 64207 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 64266 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || || ||||| || || |||||||| Sbjct 64267 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 >seq1585 Length=212 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| |||||||| | || || || || ||| Sbjct 185 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAG 126 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || |||||||| || || || || || Sbjct 125 ATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 66 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || || ||||||||||| ||||||||||||||||| Sbjct 65 TCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGACA 6 Query 288463 AATAT 288467 || || Sbjct 5 AAGAT 1 >seq999 Length=205769 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||| |||||||| || | || || || |||||| Sbjct 80421 TCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAG 80362 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || || || |||||||| || || || || || Sbjct 80361 ATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 80302 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 80301 TCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACA 80242 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 80241 AAGATCTGCAT 80231 >seq2012 Length=1281 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 207839 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 207894 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 257 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 316 Query 207895 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 207953 | |||| ||| | | ||||||||| | | ||||||| ||||||||||| || | Sbjct 317 TTAACTCGGCCACCGACTATGTTTCCATGTCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 376 Query 207954 CCGCAATTTGACAGTGTCGCAA 207975 ||||||||||| |||||||||| Sbjct 377 CCGCAATTTGATAGTGTCGCAA 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179613666902210