Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2275 259 5e-64 seq2563 161 1e-34 seq999 111 2e-19 seq1585 95.1 1e-14 seq2363 93.3 4e-14 >seq2275 Length=103831 Score = 259 bits (286), Expect = 5e-64 Identities = 1066/1636 (65%), Gaps = 55/1636 (3%) Strand=Plus/Plus Query 152850 CGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 ||||| || ||||| || || || || || || || ||||||||| | || ||||||| Sbjct 42900 CGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTG-ATCTCCCAGACCGTCTTGTACAG 42958 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | || || || || ||| | |||||| || || || ||| || | || Sbjct 42959 CTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 43018 Query 152969 AGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | || ||| | | | ||| ||| | | | | | || || | ||| || Sbjct 43019 A-CGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACG 43077 Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || ||||| ||||| | ||| || | | || | ||| || ||| Sbjct 43078 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 43137 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||| ||| || || ||| ||| | ||||||||||| |||| Sbjct 43138 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 43197 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| || | | |||| | | || ||| |||| Sbjct 43198 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 43257 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| ||||||| || | ||||||||||||||| ||| | || | ||||| Sbjct 43258 ACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCG 43317 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGAGC 153326 |||||| |||| ||||||||||| | | ||||| ||||| | | | ||| || Sbjct 43318 AGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCA-CGATCGCTCCAGT 43376 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || ||| || || || || | || || | ||| Sbjct 43377 GCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT-CGCCGAGCCTCGGCCGACTC 43435 Query 153386 GTACGGCATGCGC-AGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 ||| ||| | | | | || || || || || || ||||| | ||||| ||||| | Sbjct 43436 AAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 43494 Query 153445 GTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 | || || | |||| || ||||||| |||| | ||||||| || || Sbjct 43495 GACGGTGACGCATGTTGGACTTGCGCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 43549 Query 153500 GATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAA 153557 ||| || ||||| ||||| ||| ||| | | ||| | || || || Sbjct 43550 GATGATCTTGTTCAGGTTCTTGCAGATGGCCTT--GGCAACGCTGTGCAGACGCTTAAAG 43607 Query 153558 TCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 || || ||| || ||| | || | | | || || || || || || || | Sbjct 43608 TCGTACGTC--TTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGC 43665 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 | || ||| ||| |||| ||||||||| | |||||||| || | |||| ||| | Sbjct 43666 ACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACT 43725 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 | || ||| | || | ||| ||||| ||||| ||| ||||| ||| | || ||| Sbjct 43726 TGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGA 43785 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGC 153794 | || ||| |||||| || | |||| ||| | || || | ||||||| Sbjct 43786 AAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTTTG 43844 Query 153795 ACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || | ||| | |||| |||||| |||||| |||||||| || ||||||||||||| Sbjct 43845 AC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 43902 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||| || || || |||| | || ||||| |||||||| ||| Sbjct 43903 CACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 43962 Query 153913 -CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || | ||| | |||||| ||||| ||||||||||| || || | ||| || ||| Sbjct 43963 TCTGC-TCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGC 44021 Query 153972 GCCTTGCAA-TCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || ||| |||||| || ||| ||| ||| | ||| | | ||| ||| Sbjct 44022 GCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGTC 44077 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATC 154084 | |||||| ||||||||||| | || | |||||| |||||| || ||||| || Sbjct 44078 CGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 44137 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGC 154143 ||||| |||| | | |||||||||||||| | |||||| | | |||| |||| | | Sbjct 44138 GACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACAC 44196 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 ||||||| || | |||| | | || | ||| | ||| | ||| |||| Sbjct 44197 CGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGC 44256 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 | || ||||| ||| || || || | |||| || || ||||||||||||||| Sbjct 44257 CACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTATCGTAGATGCCGTCGAT 44314 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | | | ||| ||||| | | ||||| |||| | | ||| Sbjct 44315 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGG-GTGCGGGGTACCGG 44373 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||| || || ||||| ||||| ||||| ||| | | |||||| | Sbjct 44374 CGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCT 44433 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 |||||||| ||||| || | |||||| ||||||| ||||| |||||||||||||||| Sbjct 44434 CGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCT 44493 Query 154441 GCGGACGTTCGGCGAC 154456 | ||||| || ||||| Sbjct 44494 GGGGACGCTCTGCGAC 44509 >seq2563 Length=74346 Score = 161 bits (178), Expect = 1e-34 Identities = 495/756 (65%), Gaps = 41/756 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| | |||||| | |||||| ||| ||| | ||||||||||| || | ||| | Sbjct 34742 AACGACAATGAGCGCCACTTTATCTCGCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGT 34683 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| | ||| | ||| ||||| |||| || |||||| | Sbjct 34682 ATCGTCAACGAGAACCTCGTTGAGCGTTT-CAGTTCGGAA-GTTCAGGCCGCCGAGGCTC 34625 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 | ||| || ||| || | | || ||| | | ||| |||||| ||| |||| Sbjct 34624 GTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTGC 34565 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC---GCGACACGCTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| | || ||| | | || ||| Sbjct 34564 TCATCGA-CA-CTTACATCCG-TGAGCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCG 34508 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 || | | ||| ||| | ||||| | ||||| | |||||| ||||||| Sbjct 34507 AGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATC---AGCGACA 34451 Query 52381 CC---GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||||| | |||||||| |||| || || ||| ||||||||| | ||||| | Sbjct 34450 AGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCT 34391 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | ||| || ||| | ||||| | | || | | || | |||||||| || |||| Sbjct 34390 CGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGT 34331 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 34330 TCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT 34271 Query 52553 ----CTACTACAAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 | || || || ||||| | ||| | |||||| | || | || Sbjct 34270 TCAGCCACCTCAGGAGGCGCGCGCACC-------------CAGACACGGTGCTCAAGATC 34224 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 ||| ||||| |||| ||||| |||| ||| | | | | || |||| ||| Sbjct 34223 ATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCGCGCTC 34164 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||| || ||||||| | ||||| |||| ||| || ||||| || || Sbjct 34163 ATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATGTCGCCGATCGCTTGCTG 34104 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCA-ATCCGTTTGAGTTTATGAACAA 52786 || |||||| | ||| | ||| | | | | || ||||||||| ||||||| ||| Sbjct 34103 GTATCGCTCGGAAACCCAGTGCACTACGGCTC-CACATGTCCGTTTGACTTTATGACCAA 34045 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||||||| | || |||||||||||||| || ||||| Sbjct 34044 CATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34009 >seq999 Length=205769 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| Sbjct 80457 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80398 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 80397 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80338 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||| | |||||||| Sbjct 80337 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT-CGATGGTGTCCGAAGACTCCAC 80279 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 80278 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80231 >seq1585 Length=212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||| || || || ||||| | | Sbjct 188 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCA 129 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 128 AAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 69 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||||||||| | || | ||| || || |||||||| || Sbjct 68 TTG-TCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTT 10 Query 138600 TACAAAAAT 138608 ||||| || Sbjct 9 GACAAAGAT 1 >seq2363 Length=266066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||| || || ||||| || || |||| | Sbjct 63892 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 63951 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 63952 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 64011 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 64012 TTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTG 64071 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 64072 ACAAAGATCTGCAT 64085 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || || ||| ||||| || ||||| | Sbjct 64120 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 64179 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 64180 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 64239 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 64240 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 64299 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 64300 ACAAAGATCTGCAT 64313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245682160400