Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2363 109 5e-19 >seq2363 Length=266066 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | ||| || || || ||||| || || || || || || || ||| Sbjct 64084 ATACCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCG 64143 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | || ||||| || || Sbjct 64144 GAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGA 64203 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| || || |||| || | || | |||||| || ||||| Sbjct 64204 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTC 64262 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||||| || ||||| || || || || ||||| || |||||| Sbjct 64263 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCATC 64314 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 || ||||| || || ||||||||||| || ||||| || || |||| || | || | Sbjct 63961 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGAT 64019 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||| |||||||||||||||||||| | || ||||| || || || || ||||| || Sbjct 64020 GGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGAT 64079 Query 45335 TTGCAT 45340 ||||| Sbjct 64080 CTGCAT 64085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987973142200