Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2563 331 9e-86 seq999 122 9e-23 seq2363 118 1e-21 seq2104 105 7e-18 seq1585 98.7 1e-15 >seq2563 Length=74346 Score = 331 bits (366), Expect = 9e-86 Identities = 599/861 (70%), Gaps = 29/861 (3%) Strand=Plus/Plus Query 132595 ACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG 132654 |||||| |||| || || | |||||||||||||| || || || || || ||||| Sbjct 33979 ACGCCAGCTTTTGCGTACTCTGCTACCTTTTTCTCAAAGAAGTTGGTCTTGCCTTCCAAC 34038 Query 132655 GAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCT-TGG--TGCCGATC 132711 |||||| |||||||| || || || | | | ||||||| ||| | |||| | Sbjct 34039 GAAATGTTGGTCATAAAGTCAAACGGACATGTGGAGCCGTAGTGCACTGGGTTTCCGAGC 34098 Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 | | || |||| | ||||| || |||| |||||||| ||||| | || || Sbjct 34099 -GAT--ACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTGTTC 34155 Query 132772 AGTCCCAGCAGACGC-ACCGGCAGCGCTTCGGTGAGAAA-GCGTTGCTCGATGGCGACCG 132829 | || | || ||| || || | | |||| || || || || |||||| | || | Sbjct 34156 ATACCGATGAG-CGCGACGGGGATTGATTCGCACAGGAACGCCTT-CTCGATTTCCACGG 34213 Query 132830 CGTCGGTGACGAT-TTCCCTAACGCGC---GCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 | || |||| ||| || | || | | |||| || | || | || || Sbjct 34214 CCTCAGTGATGATCTTGAGCACCGTGTCTGGGTGCGCGCGCCTCCTG----AGGTGGCTG 34269 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | | ||| |||||||| || | |||||||| | || ||||| |||||| | Sbjct 34270 AAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 34329 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | ||||||||||| ||||| || |||||||| || || | |||||| |||| Sbjct 34330 AACGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCC 34389 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || || |||| |||||||||||| || || || ||||| |||||| |||| ||||| Sbjct 34390 GAGAAAAAGATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGC 34449 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 ||| | |||||| || || ||||| |||||||| | |||||| ||| || || ||| Sbjct 34450 TTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCG 34509 Query 133126 ATGGCGTTCAACAAACGGAGTTT--CTCTTCCGAGG--AACGCACGTAGGTGTCGATGAG 133181 | ||||| ||||| || || | || | ||| ||| | ||| ||||||||||| Sbjct 34510 ACGGCGT----CAAACAGATATTCACGCTGCTCAGGCTCACGGATGTAAGTGTCGATGAG 34565 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 ||| || | |||||||| | ||||||||| ||| || || ||||| ||||| || Sbjct 34566 CAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACG 34625 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | |||| ||||| | ||||||||| || || || ||||||||||| || Sbjct 34626 AGCCTCGGCGGCCTGAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACC 34685 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA- 133360 || || ||||| || || ||||| ||| ||| || |||||||| |||||||||| Sbjct 34686 ATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAG 34745 Query 133361 --AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 | ||||||||| | ||||||||| ||||| | |||||| ||||||| || || Sbjct 34746 CTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGA 34805 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 |||||||| || |||||||| Sbjct 34806 AGCCTCGGCCTTCTTGTACAT 34826 >seq999 Length=205769 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || |||||||| |||| || ||| | Sbjct 80228 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80287 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| ||||| ||||| Sbjct 80288 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80347 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || || || |||||| Sbjct 80348 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80407 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||||||| ||| || | || || Sbjct 80408 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80457 >seq2363 Length=266066 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||||||||| ||||| || |||| |||||| || | Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 64253 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 64195 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 64194 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 64135 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || || || ||||||| || Sbjct 64134 CATTCAGAAAGAGTCGACGCTTCA 64111 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| |||| |||||| | | Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 64025 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 63967 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || |||||||| Sbjct 63966 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 63907 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || || ||||| || ||| Sbjct 63906 CATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGT 63870 >seq2104 Length=129475 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| | || || ||| || | |||| | | | | | || | Sbjct 31487 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31546 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| |||||| ||||||| ||||| || || | ||| || || Sbjct 31547 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31606 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||||||| |||||||||||||| |||||| |||| || || Sbjct 31607 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31666 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||| || | || || Sbjct 31667 CTTGTGCTCCGTCTGCGTGGTGG 31689 >seq1585 Length=212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || || || || || || || ||||| || |||||| | || || ||| | |||||| Sbjct 1 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 60 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | | || | || |||| ||||| ||||| || ||| | ||||| ||||| Sbjct 61 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 120 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 ||||| | || || || ||||| || |||| ||||| ||| |||||||||||||| Sbjct 121 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 180 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||| || || | ||| |||| Sbjct 181 AAGGAGTCGACACTTCACCTTGTGTTGCG 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155950428800