Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2363 93.3 2e-13 seq2034 86.0 2e-11 >seq2363 Length=266066 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| || || || || || Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| |||||||| |||||||||||||| Sbjct 64025 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 63966 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | ||| || |||| || || Sbjct 63965 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 63906 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 63905 ATTCAGAAGGAATCCACTCTTCACTTGGT 63877 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || || || || || |||||||| || || || || || Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| |||||||| |||||||||||||| Sbjct 64253 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 64194 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || ||||| || |||| | | || || || Sbjct 64193 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 64134 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || |||||| | ||||| |||| Sbjct 64133 ATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACT 64096 >seq2034 Length=137209 Score = 86.0 bits (94), Expect = 2e-11 Identities = 270/417 (65%), Gaps = 11/417 (3%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | |||| | | || || ||||| | || ||||| |||| ||||| Sbjct 37333 GGCAAGCCCCAGATTCGCATTGAATACAAGGGTGAGAAGAAGACTTTCACTCCCGAAGAG 37274 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||||| || ||| || || || || || | ||| | | Sbjct 37273 ATCTCATCCATGGTTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACC 37214 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||| || | |||||||||||||| ||||| || | || || || || || Sbjct 37213 GTCAAGGATGCTGTCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACC 37154 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||| | || | || || | || || || || || || || || Sbjct 37153 AAGGATGCTGGTATCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCT 37094 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaaaaaTATTTT 451488 || || | || || || || | | ||||| || || || || ||| || | Sbjct 37093 GCCGCCATCGCTTACGGTCTCG-------ACAAGAAGACCGAGGGTGAGAAGAATGTTCT 37041 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||| | |||||||| || ||| || | ||| | ||||| || || | Sbjct 37040 CATTTTCGATCTCGGTGGAGGTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTAT 36981 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || ||||| ||| |||||| || ||||| || ||||| || |||| || Sbjct 36980 CTTCGAGGTCAAGGCCACCGCTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAA 36924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975650179061060