Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2275 170 2e-37 >seq2275 Length=103831 Score = 170 bits (188), Expect = 2e-37 Identities = 1125/1780 (63%), Gaps = 63/1780 (4%) Strand=Plus/Plus Query 109376 TAAATTGGATTGG--TCGA-GCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGA 109432 |||||||||| | |||| || || ||| | || ||||| || ||||||| |||| Sbjct 42742 TAAATTGGATCGCGTTCGACGC---CGGCTTGGTCCGCAGATAGTATGTACCCGTCTTGA 42798 Query 109433 GACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCA 109492 | || ||||| |||| | ||||| || | ||| | || ||||| | | Sbjct 42799 GTCCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGG----TGCC 42854 Query 109493 TAAAC----AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATG 109548 ||| | ||| | |||||| ||||| ||| || || || || || |||||| Sbjct 42855 GAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATG 42914 Query 109549 TCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCG 109608 |||||||| ||| ||||| || |||||||| |||||||||| |||||||| || Sbjct 42915 TCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCA 42974 Query 109609 GGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATC 109665 |||||| | | ||| || || || || || | | | |||| | | ||||||| Sbjct 42975 GGAATGCCTGGCACGTTCTGGATCGATCCGCCG---TGCGCGATGATACGGTTCTTCATC 43031 Query 109666 TCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGA 109723 | ||| ||| || || || || ||| |||||| | ||| ||||| Sbjct 43032 G-TGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCA-CGGGTTCACCACCT 43089 Query 109724 CAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACT 109783 || ||||| || || || || ||||||||| | ||| || || ||||| |||| Sbjct 43090 GGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACT 43149 Query 109784 CATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGT 109843 | || ||| ||||| || || ||||| || ||||| || |||| || || || Sbjct 43150 CGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGT 43209 Query 109844 TTCGGAGACC---CTTCG---TCTTTACCCGCTCACGCATTGCGTCCCAATCATA-ACGA 109896 | || || || ||| | |||| || | | || | || |||| || | | | Sbjct 43210 TGCGAAGCCCGTGCTTGGCGATCTTGGCCT--TGA-GC--TCCG-CCCAGTCCCACAGGT 43263 Query 109897 CC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGG 109955 || || | | ||| ||||||| || || | |||||| | ||| || Sbjct 43264 CCGACG-------GCGTGACCC-CCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGG 43315 Query 109956 AGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAG 110015 || || | | ||||||| || | ||| |||| |||| | || ||| || Sbjct 43316 CGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAG 43375 Query 110016 TGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTC 110075 ||| || || || || |||||||| || || | |||| | |||| ||| | | || Sbjct 43376 TGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTC 43435 Query 110076 GAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGG 110134 || | | ||| || | || ||| ||||||| || ||||||||||||| || || | Sbjct 43436 AAACGCAT-ACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 43494 Query 110135 GGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGA 110194 | || || |||||| || || || || || || || |||| |||||||| Sbjct 43495 GACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGA 43554 Query 110195 CCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG 110254 | || || ||||| | | ||| | | || || | | ||| ||| Sbjct 43555 TCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACG 43614 Query 110255 TTTTCGTCTCC---TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | || ||| | | | ||| | |||| || || || || || || |||||||| | Sbjct 43615 TCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTG 43671 Query 110312 AAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGA 110371 |||||| || |||| || | || || |||||||||||||| | ||| || Sbjct 43672 CCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCG 43731 Query 110372 CACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGG 110431 || | ||||||||| || ||| |||| || ||||| || || ||| | ||| Sbjct 43732 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGT 43791 Query 110432 TACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTT 110490 | || || || |||||||||| ||| ||||| | ||| | | || || || ||| | | Sbjct 43792 TGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGAC-GGT 43849 Query 110491 GCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA 110549 ||| || | | |||| || ||||||| ||| | | |||||| || | ||||| Sbjct 43850 GCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTA 43909 Query 110550 CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 || | ||||| || || ||| || | ||| ||||| | || || ||| Sbjct 43910 GCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC 43969 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGC 110669 |||||||||||||| || ||||| | ||| | || |||| || ||||| ||| | Sbjct 43970 GACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCAC 44029 Query 110670 CTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGG 110729 ||| || | || ||||| ||| || || | || || | || |||||||||||||| Sbjct 44030 CTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGG 44089 Query 110730 TTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGC 110786 ||| | || | ||| | || || ||| || |||||| || ||||| || Sbjct 44090 TTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGC 44149 Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846 ||| |||||||| | |||||| || | ||| || | | ||| || || || Sbjct 44150 AGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGC 44209 Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 ||| || || |||| ||| ||||| | | || || ||||| ||| ||| Sbjct 44210 AATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 44269 Query 110907 ACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 || |||| | ||| |||| ||| | || || || || ||||| || |||| Sbjct 44270 GGAGATCATGGCACAAGTCT-TGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCA 44328 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 ||| || || ||||| || || | ||| || | || || || || |||||||| |||| Sbjct 44329 TGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAG 44388 Query 111026 GTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA 111085 | | || || | || ||| ||||| |||||| || |||| ||| | Sbjct 44389 GCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 44448 Query 111086 CATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || | ||||| || || | || |||||||||| ||| Sbjct 44449 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCAT 44488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588956158871000