Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2363 179 8e-40 seq2104 140 7e-28 seq1585 138 3e-27 seq999 125 2e-23 >seq2363 Length=266066 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| ||||||||||| || |||||||| ||||| ||||| |||| || |||| Sbjct 64095 GAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCG 64154 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||||||||||||||| |||||||| || || || || || |||||||||||||| Sbjct 64155 GCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTC 64214 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||||||||| || ||||||||||| || ||||| || || Sbjct 64215 CTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGT 64274 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | || || || || | ||||| Sbjct 64275 AATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || ||||| ||||| || | ||||| | |||||||||||||| Sbjct 63882 GTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTG 63941 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || || || || |||||||||||||| |||||||| || || Sbjct 63942 CTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTT 64001 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||||||| || ||||| || || | ||||| ||||| Sbjct 64002 GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGT 64061 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 64062 GAGCGTCTTGACAAAGATCTGCAT 64085 >seq2104 Length=129475 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || || || ||||| || | || || | ||||| ||| Sbjct 31671 ACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 31612 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 31611 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 31552 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||||||||| ||||| |||||||||| ||||| Sbjct 31551 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 31492 Query 195112 CCTGT 195116 ||||| Sbjct 31491 CCTGT 31487 >seq1585 Length=212 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| ||||||||||| || ||||| || || || ||||| || | || || | Sbjct 212 AGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 153 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| || || || ||||| || || || || || Sbjct 152 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 93 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || |||||| || || || ||||| ||| ||||| |||||||| Sbjct 92 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTG 33 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | |||||| || |||| ||| || || || Sbjct 32 ATCGTCTTGCCGGTCAGAGTCTTGACAAA 4 >seq999 Length=205769 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | ||| || | || || |||||||| Sbjct 80434 GTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGAGCTG 80375 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || ||||| || |||||||| || ||||| || || || Sbjct 80374 CTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTT 80315 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||||||| ||||| || || || | ||||| || || Sbjct 80314 GGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTACCCGT 80255 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 80254 GAGGGTCTTGACAAAGATCTGCAT 80231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109443289947065