Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2275 324 3e-83 seq2563 232 1e-55 >seq2275 Length=103831 Score = 324 bits (358), Expect = 3e-83 Identities = 1151/1764 (65%), Gaps = 81/1764 (5%) Strand=Plus/Plus Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||| || |||||||| ||||| | ||||| || |||||| || |||||| | | | Sbjct 42902 GTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTT 42961 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848 |||| | || || | ||| || | |||||| | || || | ||| ||| | | Sbjct 42962 CTTGATGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACG 43021 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-ACCAGGTGAG 212907 | | | |||| |||||| |||||| || || | || | | | || | Sbjct 43022 GTTCTTCATCGTGTC---GTTCCACAGGCCC-TGCTCCACCAGCTCGCGCAACAACCACG 43077 Query 212908 GGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGG 212967 |||| || | |||||| ||||| | |||||| | || ||| | ||| || || || | Sbjct 43078 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 43137 Query 212968 GCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCA 213027 |||||| || |||||| ||||| ||||| || || || ||||| || |||| Sbjct 43138 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 43197 Query 213028 CCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCC 213087 ||| || ||| | | ||||||| | |||| | | ||||| |||||||||| Sbjct 43198 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 43257 Query 213088 ATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGC 213147 | ||||||| | | || ||||||||| ||||||| || | || Sbjct 43258 A---------CAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCT-GC 43307 Query 213148 TCACGGGGCTGCCCTG-GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 | |||| || | ||| | |||| ||| |||| || ||||||||||| || Sbjct 43308 GAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGAT 43367 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || ||| || |||| ||||||||| ||||| |||| | ||| || | ||||| Sbjct 43368 CGCTCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCG 43427 Query 213267 GGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 | ||| | || |||| | |||| |||| |||| || || ||||| || ||||| Sbjct 43428 GCCGAC-TCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGAT 43486 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||||| || | ||| | || ||| |||||| | || |||||| | || || |||| Sbjct 43487 CCCGATCGGACGGTGACGCATGTTGGACTTGCGCGC-CTCCTCGACCGGATAGTAGTTAA 43545 Query 213385 AGTCGATGATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 ||||||||||||||| ||||| || | ||||| |||| || | ||| || Sbjct 43546 TGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCC---TTGGCAACGCTGTGCAG--ACG 43600 Query 213442 CGTGATTGAACACGTA-GCCCCCGTC-CTGCA-CAA---ACTCAGGCAGGGCGATGCTGG 213495 | || || |||| | | ||| ||| ||| || ||||| ||||| || Sbjct 43601 C----TTAAAGTCGTACGTCTTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGG 43656 Query 213496 CCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 | |||||||| || |||||||| | | ||| | ||||||| ||||||||||| |||| | Sbjct 43657 CGAGGTTGCACACTGCCACCTCGTCGGGAG-CGCTGTACTCGATGATCTCGGTACACAAG 43715 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| ||| ||| ||||| ||||||| ||||| ||| |||||| | |||||| Sbjct 43716 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 43775 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || || ||| | ||| || ||||| ||| ||| | || || | |||||| | | Sbjct 43776 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 43835 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 || ||||| ||| | ||| | || |||||||| | |||||||| Sbjct 43836 TGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCG--GCCTCGTAGCGCTCGTAGAGGCGC 43892 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | || |||| || || | | || || || || ||| |||||||| | Sbjct 43893 TCAAACTCGTCACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGAC 43952 Query 213795 CAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 ||||| |||| | ||| ||| |||| |||||| || || || ||||| || || ||| Sbjct 43953 CAGTCGCCGTTCTGCTC-GACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAA 44011 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 || || | | | | ||| ||| ||| ||| |||||||| || || || ||||| Sbjct 44012 GAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 44071 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970 || ||||| |||||| || || ||||| || |||||||| || || | |||| || || Sbjct 44072 GACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACC 44131 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 |||||| || | || ||||||||| ||| || | ||| || | |||||| Sbjct 44132 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTG-- 44189 Query 214031 CTGTC--CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA---- 214084 ||| | ||||||| || || || |||||||||| | | | || ||| ||||| Sbjct 44190 CTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCAC---GGATGCA-ATGGATGTT 44245 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGAT 214144 ||| || ||||||||||| ||||||||||||||| || | | | || || ||| Sbjct 44246 GAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGAT 44305 Query 214145 GCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA 214204 |||| | || |||||| | | | | | | |||||| ||||||||| || | Sbjct 44306 GCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGG 44365 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCT 214264 | || | |||||| ||||| || ||| ||| | | |||| | || | || | Sbjct 44366 GGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTT 44425 Query 214265 GTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAG 214324 ||| ||||| | | | |||||| || |||||| | |||| | ||| || Sbjct 44426 GTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAG 44485 Query 214325 CATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCG 214378 |||||||||||| | ||| || | |||| ||| || ||||| ||||| || Sbjct 44486 CATGTGCTGGGGACGCTC--TGCGACCTT----GCCGTTGATGCGGAGCAAATAGGAACG 44539 Query 214379 CTCCAGAGTCTTGAACCC---AAAGTAGGAGTAGGTATGATCGTTCCCGTGTATGAGGGC 214435 ||| || |||||||| || ||||| | ||| || | |||| ||| |||| ||| Sbjct 44540 CTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGT-GGAAGTCACGTT--CGTAGATGATGGC 44596 Query 214436 AGCGTCCAGCTCTTCCGCGTGCTC 214459 | ||| |||| ||| |||||| Sbjct 44597 CGAGTCGAGCTGGTCCTTGTGCTC 44620 >seq2563 Length=74346 Score = 232 bits (256), Expect = 1e-55 Identities = 554/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Plus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGT-- 47915 |||||||||||||| ||||| || |||||||| ||||| ||| ||| || || Sbjct 34009 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 34068 Query 47916 -TGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTAC 47974 ||| || | ||| | | || | | | |||||| | |||| ||||| ||| Sbjct 34069 GTGGAGCCGTAGTGCACTGGGTTT---CCGAGCGATACCAGCAAGCGATCGGCGACATAC 34125 Query 47975 TCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTT 48034 || ||||||| ||||||| || ||||||| || ||||| | ||||| | | | Sbjct 34126 TCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATTCG 34185 Query 48035 GTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCT 48094 || ||| ||||||| || | |||||| || | |||| || || | || Sbjct 34186 CACAGGAACGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCAC-CGTGTCTGG 34244 Query 48095 GAGGGTTTGT-TGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | | | | | | ||||| || |||| | ||||||||||||| |||| | || Sbjct 34245 GTGCGCGCGCCTCCTGAGGTGGCTGA---AGAGAAGGCAGGCAAAGTCCGTGTGAAGACC 34301 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 ||||| || ||||||| |||||||||| |||||| ||||||| || | || || Sbjct 34302 CTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTT 34361 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||| || | ||||| ||||| ||||| ||||||||||| || || || ||||| Sbjct 34362 GAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGC 34421 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 | || | ||| |||||| || |||||| |||||| ||| |||||||| || Sbjct 34422 GACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGC 34481 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACT-CACCTG 48392 ||||| ||||| | || || ||||| | ||| || || | | | || | | | Sbjct 34482 CTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTGCTCAGG 34541 Query 48393 CGTCCGCAACATAG-GTAG-TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 | || | || || | |||||||| | ||| |||| ||||| | ||||| || Sbjct 34542 CTCACGGATGTAAGTGTCGATGAGCAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCAT 34598 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 ||||||||| ||||||||| | ||||| |||| ||||| | ||| | Sbjct 34599 CATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTGAAACG 34658 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTT 48570 ||| | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 34659 CTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGA 34718 Query 48571 AAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAG 48627 | || |||||||| |||| | | || || |||| | || | ||| ||| || Sbjct 34719 GATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAG 34778 Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | || || | ||||||||||| || || || |||||||| Sbjct 34779 GTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 34826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931501418988800