Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2034 114 8e-20 seq2363 96.9 2e-14 >seq2034 Length=137209 Score = 114 bits (126), Expect = 8e-20 Identities = 361/553 (65%), Gaps = 10/553 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 37612 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 37553 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| ||||| ||||| | || || || |||||||| | || || Sbjct 37552 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 37493 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||||||||| || || | || | || || ||| || Sbjct 37492 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 37433 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || || || | ||||| || || || || || || | ||||| ||| Sbjct 37432 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTCGACGACGCTGAGGTCCAGTCT 37373 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAA--ACCATATATAGAAG 474626 || ||| || |||||||| |||| | || ||||| || ||| || | Sbjct 37372 GACATGAAGCACTGGCCTTTCGAGGTTACCTCGGTCGGTGGCAAGCCCCAGATTCGCATT 37313 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTT 474684 |||||| | ||||| | | | | ||||| || ||| | || || || |||||| | Sbjct 37312 GAATACAAG--GGTGAGA--AGAAGACTTTCACTCCCGAAGAGATCTCATCCATGGTTCT 37257 Query 474685 AGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||| ||| | || | |||| | || || || || | ||||| || Sbjct 37256 CCTCAAGATGCGCGAGACTGCCGAG-GCTTACCTCGGTGGTACCGTCAAGGATGCTGTCG 37198 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||||||| || || || || || || || || || || || || ||||| || | | Sbjct 37197 TCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTATCA 37138 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | || ||||| || | ||||| || || || || || || ||||| | ||||| | Sbjct 37137 TTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACG 37078 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 37077 GTCTCGACAAGAA 37065 >seq2363 Length=266066 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| || ||| || || || || || | ||||| Sbjct 63864 ACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGT 63923 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| || ||||| |||||||| || |||||||||||||| || Sbjct 63924 GCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCC 63983 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||||||| ||||| Sbjct 63984 TTCCTTGTCTTGGATCTT 64001 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || || | |||||| ||||| || ||||| || || || || | || ||| Sbjct 64093 CGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTT 64152 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||| Sbjct 64153 CGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCT 64212 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| ||||| || || || || | | ||| || Sbjct 64213 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 64272 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| |||||||| || || || Sbjct 64273 GTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTG 64310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268063598373860