Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq777 107 6e-18 seq2563 102 2e-16 >seq777 Length=207449 Score = 107 bits (118), Expect = 6e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 302469 CTGCGACTCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTT 302528 ||||| ||| |||| | ||| || ||||| || ||||||| | |||| |||| || Sbjct 196422 CTGCGTCTCGACCTGGGCACCGTCGATGCCGTCTTCACCGTAGGCAAACTGGATGACGTT 196363 Query 302529 GTTCTTGTTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGAT 302588 ||| | |||| ||||| || || | | ||| | || || | ||||| Sbjct 196362 GTTGGTAGAGTTTCGGACGGTGCCGTCGTAGCAGACCATCACATCCTCAAGCGCCTTGAC 196303 Query 302589 TAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAAC 302648 |||||||||||||| ||||| || | || || |||||||||||||| ||||| | Sbjct 196302 CAAACGACGCTGAATGTAACCCGTCTCGGCGGTCTTGACAGCTGTATCAATGAGACCTTC 196243 Query 302649 ACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGC 302707 |||||| |||| || || ||||| | ||||| | ||| || || | | | ||| Sbjct 196242 TCGACCAGCCATGGCGTGAAAGAAGAACTCTT-GAGCCGTGAGACCTCGGAGGTACGAGT 196184 Query 302708 TCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || |||||||| || | |||||| | |||| |||||| || || ||||| | | Sbjct 196183 TTTCGACGAAACCGCGAGACTCGGGAGTGAAGTCGTCCTTGGTGAAATGCGGCAGACTGC 196124 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | ||| | || ||||| || || || || |||||| || | || | Sbjct 196123 GATGGCGGAAACCGAACGGAATACGTTTACCCTCGACCGACTGCTGGCCGACACAGGCTG 196064 Query 302828 TCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAG 302866 ||||||||| || || |||| | ||||||||| |||| Sbjct 196063 ACATCTGCGAGATGTTGATAAAGGA--GCCCTTGGATCCAG 196025 >seq2563 Length=74346 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133452 AGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTC 133511 |||| | ||||||||| || ||||||| ||||||||||| | ||| || |||| Sbjct 34486 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 34427 Query 133512 TCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTT 133571 | || || ||||| | || |||||||| |||||| || | ||| ||| || || | Sbjct 34426 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 34367 Query 133572 GGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGG 133631 |||| || ||||| ||| | | || || || || || ||||| || || || | | Sbjct 34366 GGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTG 34307 Query 133632 ACGAGGCACTTCACACCGAATTTGCC 133657 |||||| |||||||| || |||||| Sbjct 34306 ACGAGGGTCTTCACACGGACTTTGCC 34281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471766778598215