Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2275 214 2e-49 seq2563 145 9e-29 seq2134 125 9e-23 seq777 107 2e-17 seq2419 86.0 8e-11 >seq2275 Length=103831 Score = 214 bits (236), Expect = 2e-49 Identities = 282/393 (72%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||||||||| |||| ||| |||||||||||||||||||| | ||||||| Sbjct 44132 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 44191 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||||| | | || | || | | ||| Sbjct 44192 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 44251 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||||||||| | || || ||||| || ||||||||||| || Sbjct 44252 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 44311 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || |||||||||||| |||||||||| || || Sbjct 44312 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 44371 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||| || ||| ||||||| || ||| || Sbjct 44372 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 44431 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | ||||| ||||| Sbjct 44432 CTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATGCCGACAGCGAC 44476 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 ||||||||||||| |||||| ||||| |||| Sbjct 44477 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 44509 Score = 113 bits (124), Expect = 6e-19 Identities = 288/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||||||||| |||| ||||| || | |||| || ||||||| ||||||| Sbjct 43693 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 43752 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||||| || ||| | || ||| |||||| |||| | | Sbjct 43753 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 43812 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG---CGCGCGGCCCTNNN 1628338 ||| |||||| |||||| || |||| ||| || || || ||| |||| Sbjct 43813 CGAGGATGGCGTACCAGAGCTTCTGCGC---TTTGACGGTGCGCTTCGAGCGACCCTCGG 43869 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | | |||||||| ||| || || || Sbjct 43870 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCTAGACCAGGGC 43929 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | ||||||||||||||| | | || | | | ||| ||||| Sbjct 43930 ACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATGAAGAG 43987 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| | ||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 43988 ATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTT 44047 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | ||| | |||||| || || | ||| ||||| Sbjct 44048 CTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAA 44107 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || |||||| ||| || Sbjct 44108 GGCACCGGGACGCTTGTTGCCACC 44131 >seq2563 Length=74346 Score = 145 bits (160), Expect = 9e-29 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | ||| ||||||||||| |||||||| Sbjct 34299 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34358 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||| Sbjct 34359 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34418 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||||||| || ||| | | || | | ||||||| | ||||| Sbjct 34419 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34475 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| | | | || ||| | || |||| |||| ||| || | || | Sbjct 34476 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34535 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || || || |||||||| || ||||| ||||||||| Sbjct 34536 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCC 34581 Score = 113 bits (124), Expect = 6e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||||||| | |||| ||| ||||||||| |||| ||||| ||||||||||| | Sbjct 34092 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 34151 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| ||||||||||| || || | || |||| || ||| | |||||||| || || Sbjct 34152 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCAC 34211 Query 868918 GGCCTCGACGATGATCT 868934 |||||| |||||||| Sbjct 34212 GGCCTCAGTGATGATCT 34228 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | |||| || | | Sbjct 34580 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCT 34639 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||| || | | ||||||||| ||||| || || || |||| Sbjct 34640 GAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGA 34699 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || || ||| ||||||||||||||| | |||| | ||| |||||| Sbjct 34700 AGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGT 34759 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||||| | |||||| |||||||||| || ||||||||||| | Sbjct 34760 CGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCT 34819 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 34820 TGTACATTTGCCA 34832 >seq2134 Length=123806 Score = 125 bits (138), Expect = 9e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| ||||| ||||| |||||| ||| |||||| |||| || || |||||||| Sbjct 97446 ATCGGTGGCACAGTGACATGCGTGATCCGCGGTGTGCCGTCAGGGCTGGGAGAGCCGTGT 97505 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| |||||||| ||| || ||||||||||| |||||||| |||||||| Sbjct 97506 TTCGACAAGCTCGAGGCCAAGCTGGCGCACGCCATGCTCAGCATCCCGGCAACCAAGGGG 97565 Query 19173 TTCGAGATTGGCAGCGGGTTTGCGGG 19198 |||||||| ||| ||||||| |||| Sbjct 97566 TTCGAGATCGGC-TCGGGTTTCCGGG 97590 Score = 109 bits (120), Expect = 7e-18 Identities = 264/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC 18141 ||| | |||||||| | |||||||||||| | || || || || ||| |||| ||| Sbjct 96636 TTTCGCGTCACCACGTACGGCGAGTCGCACTGCGCCTCGGTAGGTTGTATCGTCGATGGC 96695 Query 18142 GTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGA 18201 ||||| ||| ||||| |||| || | | |||||| ||| | ||| | || || || Sbjct 96696 GTGCCTCCGGGCATGGCACTCGCTGCGCACGACATTCAGACGCAGCTCTCACGTCGTCGG 96755 Query 18202 CCGGGCCAGGGCGCACTT-TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTC 18260 |||||||| | || | || | ||||||||| | || || || ||| ||||| || Sbjct 96756 CCGGGCCA-GTCGAATTTGACGACGCCGCGCGATGAAAAGGACCGTGTCGAGATCCAATC 96814 Query 18261 GGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGA 18320 ||| || |||| | ||||| ||| |||| ||| | | | || ||||| || Sbjct 96815 GGGTGTCGAACGCGGCGTGACGCTGGGCACGCCGATCGCCATGCTGGTACGCAACCAGGA 96874 Query 18321 CCAGCGGCCCGTCGACTATTCCGAC-ATGTGC-----AAGGTGCCGCGGCCCTCACACGC 18374 ||||| || |||||| | ||| || || | | || || || || ||||| Sbjct 96875 TCAGCGTCCACACGACTACACGGACGATACGCTGGATACGTATCCACGCCCTTCGCACGC 96934 Query 18375 CGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTC 18434 ||||| || || ||| |||||| | ||||||| |||||||| || || || Sbjct 96935 CGACTTTACGTATCTGGAAAAGTACAACGTCAAGGCAAGCTCGGGCGGTGGAAGGAGCTC 96994 Query 18435 TGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || || |||||| | || ||||| || ||||| Sbjct 96995 GGCTCGTGAGACCATTGGACGAGTCGCTGCGGGCGC 97030 >seq777 Length=207449 Score = 107 bits (118), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || ||||||| |||||| |||||||||||||||||||||| ||||| Sbjct 195174 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 195233 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| |||||||||| ||| || | | || |||||| | |||| | | | Sbjct 195234 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 195293 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || ||| | ||| || ||||| ||||||||||||||| |||| ||| | || ||| Sbjct 195294 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 195353 Query 507883 CGCCCTC 507889 | | ||| Sbjct 195354 CACGCTC 195360 >seq2419 Length=90121 Score = 86.0 bits (94), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 1573932 TGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCG 1573991 ||||| || |||| || |||||| || | | |||| ||||||||||||||||| Sbjct 70586 TGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCGAACTCAACGCT 70527 Query 1573992 TCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC----AA 1574047 || ||||| || || ||||| || || || || | |||||| ||| | | || Sbjct 70526 TCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACGTTTGCGCAAAA 70471 Query 1574048 G--AGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 | || ||| || || |||||| | || ||| | ||||||||||||||||| || | Sbjct 70470 GAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACGAGGCGGATAGT 70413 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 | || | || || || ||||| ||||| |||||||| Sbjct 70412 ATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGA 70372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106918035679315