Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2275 201 1e-46 seq2363 138 1e-27 seq999 105 6e-18 seq2104 93.3 4e-14 >seq2275 Length=103831 Score = 201 bits (222), Expect = 1e-46 Identities = 950/1474 (64%), Gaps = 70/1474 (5%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| ||| |||||| || ||||||| || Sbjct 43086 ACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAG 43145 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||| ||||| |||||| ||| | ||||||||||| |||| || || Sbjct 43146 CACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGC 43205 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | ||||| |||| || | |||||||| || ||||||||||| Sbjct 43206 GAGTTGCGAAGCCCGTG---CTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGG 43262 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || || | |||||| |||||||| ||| ||| ||||| ||| Sbjct 43263 TCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCG 43322 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||||| ||||| || || | |||| |||| | |||| || || || | Sbjct 43323 GCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGC 43381 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || |||||| || || || |||||||| ||| ||| Sbjct 43382 GTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACG- 43440 Query 138864 CATGCGG-AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 ||| | | ||| ||||||| || || || || || || || | |||| || || | Sbjct 43441 CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGT 43500 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCT--TCGATAGGATAATAGTTTACATCGATGATTTT 138980 | |||| || ||| || ||| || |||| ||||| ||||| | |||||||| || Sbjct 43501 GACGCATGTTGGAC--TTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTT 43558 Query 138981 GTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTT--AATCGTTCAAAATCGTATGT 139037 ||| | || | ||| || |||| | | ||| | | || | ||| ||||| || Sbjct 43559 GTTCAGGTTCTTGCA-GATGGCCTTGGCA--ACGCTGTGCAGACGCTTAAAGTCGTACGT 43615 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 ||| ||| || ||| | || || | |||||||| | |||||| Sbjct 43616 C------TTG--GTC-ACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCA 43666 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 ||| ||||| |||||||| ||||||| |||| || |||| |||||| || ||||| Sbjct 43667 CACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTT 43726 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 |||||| || | || | || ||||| || ||||| || || ||||| || || | Sbjct 43727 GATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAA 43786 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA- 139276 || |||| || || |||| ||| | ||| | || || ||||| | Sbjct 43787 AGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGT---ACCAG-----AGCTTCTGC 43838 Query 139277 --TTTGACG---CACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 ||||||| | | | || | ||| |||||| |||||||| || || Sbjct 43839 GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAAC 43898 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 |||| |||||||| ||| | ||| | | |||| || || |||||||||||||| | Sbjct 43899 TCGT-CACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTC 43957 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC---GAACAGCAA 139445 ||||||| || ||| | | ||||||| ||||| || | ||| | || ||| ||| Sbjct 43958 GCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGC-- 44015 Query 139446 ATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAAC 139505 || ||||| | || ||| || ||| || || ||||| ||||| || Sbjct 44016 -TCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGAC 44074 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTG 139562 ||| | |||||||||||| | || || || | || || || ||| ||||| || Sbjct 44075 GTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTG 44134 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 ||||||| || ||| || ||||| ||||| | ||| ||| | | ||| | |||| Sbjct 44135 GTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT-GCTGA 44193 Query 139623 T-CCGTTGGTGCTACGG--ATGG--GA-CTGTTGCGAGCTCGGACGTCATGTACATTGAT 139676 |||||||||| ||| ||| || | | ||| | |||| | ||| | |||| Sbjct 44194 CACCGTTGGTGC--CGGCAATGTACGAGCCGGTGCCA---CGGATGCAATGGATGTTGAG 44248 Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATAC 139735 |||||| || ||| | ||||| || | | ||| || | | || ||||| || | Sbjct 44249 GCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTG-AGGGTATCGTAGATGC 44307 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | || ||| |||| ||| || || || ||||| ||||| || ||||| | | Sbjct 44308 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 44367 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 | ||||| || || ||||| ||||| || || | || |||||| | | || Sbjct 44368 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 44427 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 |||| |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||| Sbjct 44428 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 44487 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 | || ||| || || || ||| ||| | ||| Sbjct 44488 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGAT 44521 >seq2363 Length=266066 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || |||||||| || | | Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 64025 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 63966 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| || ||| | | |||| || || ||| Sbjct 63965 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 63906 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| |||||||| || || |||||||| | || | || ||||||| Sbjct 63905 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGCG 63857 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| ||||| || || || || ||||| |||||||| || || | Sbjct 64314 GATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTC 64255 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 64254 GGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 64195 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| || || ||| | || || || || Sbjct 64194 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 64135 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || ||||| || ||| | || |||||| | ||||| || Sbjct 64134 CATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTCCGCGGTGG 64087 >seq999 Length=205769 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || ||||| || || | | Sbjct 80230 GATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTC 80289 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 80290 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 80349 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | | || || || || Sbjct 80350 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAA 80409 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || |||| || || Sbjct 80410 CATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80457 >seq2104 Length=129475 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24727 AACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACA 24786 ||| ||||| || ||||| || || || || || | ||||| | || | || || Sbjct 31486 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 31545 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||| || ||||| || || || || ||||| || || || ||||||| ||||| || Sbjct 31546 CAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 31605 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | | || || || ||||| || ||||||||||| || || Sbjct 31606 GCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCA 31665 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 | | ||| | || |||| || || Sbjct 31666 CCTTGTGCTCCGTCTGCGTGGTGG 31689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449882444074600