Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2275 495 4e-135 seq2563 168 6e-37 seq2363 120 3e-22 seq999 113 4e-20 seq1585 105 6e-18 >seq2275 Length=103831 Score = 495 bits (548), Expect = 4e-135 Identities = 1259/1873 (67%), Gaps = 72/1873 (4%) Strand=Plus/Plus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| || ||||||||||| | ||||||||||| ||| | ||| |||| || Sbjct 42764 CGGCTTG-GTCCGCAGATAGTATGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGT 42822 Query 148003 GCACCGACGACATGAGCGTGT----ACGTCGGGTGCGGCACAAACAGA---TTAAACGAC 148055 ||| ||| | ||||| ||| ||||||| ||| | | | || || | |||| Sbjct 42823 GCATCGAGG---TGAGC-TGTCCAAACGTCGG-TGCCGAA--AGGTGAATGTTGAGCGAC 42875 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT-T 148114 || |||| || ||||| || ||||| || ||||| || |||| |||| || | | Sbjct 42876 TGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGA-TCGCCTTCTGGCT 42934 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 ||||||||| |||||||||||||| |||||| | || |||||||| | | ||| Sbjct 42935 GATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTG 42994 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTC 148234 | ||| |||| |||||| | || | || ||| ||| | | ||| |||| Sbjct 42995 GATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTC 43054 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 | ||| || | || || | ||||||||||| ||||| || |||||||| ||||| Sbjct 43055 CACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG 43114 Query 148295 CAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 ||| || | |||| |||| | || || || ||||||| ||||| ||||| | Sbjct 43115 -AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCG 43173 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| || || ||||| || | ||||||||||||||| | ||| | || || | Sbjct 43174 TCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCT 43233 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 || ||| || ||||||||||||| || |||||| || || |||||||||||||| Sbjct 43234 TGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACT 43293 Query 148474 GCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCC 148532 ||| | | | | || | ||||| ||| |||||| ||| |||||| | | Sbjct 43294 GCA-ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCA 43352 Query 148533 GCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 ||||| ||||| | |||| || || ||| ||| ||| || ||||| || ||| ||| Sbjct 43353 GCCAGCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTT 43411 Query 148592 GAGCAGC---GCC---GCCGACTCGCTTTCGTACGGCATACGC-AGCCGCACAAACGCGT 148644 || || ||| |||||||| ||| ||||| | | || ||||| | Sbjct 43412 CAGTCGCCGAGCCTCGGCCGACTCAA------ACG-CATACCCCATGATCATGAACGCAT 43464 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| || || | || || || ||||| |||||||| |||||| Sbjct 43465 CCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCT 43524 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGC-GCACCACCACCTTT 148763 ||||| |||||||| ||| |||||||||||||| || || ||| | |||| Sbjct 43525 CCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTG 43583 Query 148764 GTAATTCTGCGCAGCAATTCAAAATCGTACTT----GTCATCTACG---ATGCATCGGTT 148816 | || ||| |||| | ||| |||||| | |||| || | ||| | | Sbjct 43584 GCAACGCTGTGCAGACGCTTAAAGTCGTACGTCTTGGTCA-CTGGGTCAATGAACGTGGG 43642 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| ||||| || |||||||| ||| ||| || || ||||||||||| | ||| Sbjct 43643 CAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGAT 43702 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||||| |||| ||| ||| |||||| ||| | |||||| || |||||||||| ||| Sbjct 43703 CTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 43762 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996 | |||||||||||||| ||| | || ||| || || ||| | || | ||| Sbjct 43763 GGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG- 43821 Query 148997 CCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAA 149053 || ||| | |||||| || ||| ||| |||||||||| |||||| Sbjct 43822 -CGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCGGCCTCGTAGCG 43879 Query 149054 AGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGG 149113 || || ||||| ||| | || |||||||| ||| | ||||| ||||||| || || Sbjct 43880 CTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGG 43939 Query 149114 GCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 ||||||||||||||| |||||| | | || | |||||| || ||||| |||||||| Sbjct 43940 GCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCA 43999 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGT 149232 ||| || || | ||| || |||| | ||| || || || ||| |||||||| Sbjct 44000 GAGTGCATAGAAGAGCTCACGCG-CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGT 44058 Query 149233 TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGC 149292 ||| | || | ||||| |||||| || |||||||| | || | || || | Sbjct 44059 CGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGAC 44118 Query 149293 GC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||| ||||||||||||| |||| | ||||||| || || || | ||| || Sbjct 44119 GCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCA 44178 Query 149350 CAATGCC---ACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCAC 149404 ||||||| ||| || ||||| || | |||| ||| |||| | || | Sbjct 44179 CAATGCCGTTGCTGACA---CCGTTGGTGCCGGCAATGTACGA--GCCGGTGCCACGGAT 44233 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCG 149462 || | ||||| ||||||||| || ||||| ||| ||||| || | |||| | Sbjct 44234 GCAATGGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTG 44291 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| ||||| ||| ||||||||| | || |||||||| | Sbjct 44292 AGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAG 44351 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| | || ||||| ||| | || || |||||| ||||| || || Sbjct 44352 AGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTT 44411 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 || ||| | | ||||| ||||| ||| || ||||| | ||| |||||||| | Sbjct 44412 TGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACA 44471 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 ||||| ||||| ||||| ||||| || ||||| || || ||| || |||||| Sbjct 44472 GCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAA 44531 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCA 149762 ||| || || |||||| |||| || | ||||||| ||||| || ||| | Sbjct 44532 TAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATG 44591 Query 149763 ATGGCGGCGTCGA 149775 ||||| | ||||| Sbjct 44592 ATGGCCGAGTCGA 44604 >seq2563 Length=74346 Score = 168 bits (186), Expect = 6e-37 Identities = 527/804 (66%), Gaps = 39/804 (5%) Strand=Plus/Plus Query 120369 TTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGG--- 120425 ||||||||| ||||| || ||||| |||| |||||||||| ||||||| || ||||| Sbjct 34008 TTTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACA 34067 Query 120426 -GTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAA 120484 || | | ||| ||| || | || | | ||| |||| || || || ||| Sbjct 34068 TGTGGAGC-CGT---AGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACAT 34123 Query 120485 ACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGC-- 120542 |||||||||| | ||||||| || |||||| || | | ||| || || | | Sbjct 34124 ACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATT 34183 Query 120543 CG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 || || ||| | ||||||| || ||||| ||||| ||| || ||||| |||| Sbjct 34184 CGCACAGGAA---CGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCACCGTGT 34240 Query 120602 G-----GC-CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCG 120655 || || || || || | | | || || ||||| |||||||||| Sbjct 34241 CTGGGTGCGCGCGCCTCCTGAGGTGGCTGA---------AGAGAAGGCAGGCAAAGTCCG 34291 Query 120656 TGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGC 120715 |||| || |||||||| ||||| || ||||||||| ||||| || |||||||||| | Sbjct 34292 TGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGAC 34351 Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775 | | |||||| |||| || | ||| || |||||| || || | |||||| ||| Sbjct 34352 CGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGG 34411 Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835 |||||| ||||||| |||||||| || || || |||| | |||||| | | Sbjct 34412 CGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAG 34471 Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGC 120895 |||| |||||||| | ||| ||| || ||||| |||| | ||| || | Sbjct 34472 CCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCAC 34531 Query 120896 GCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACG 120954 ||| | ||| || | | || | ||||||||| ||| | |||| ||| | | Sbjct 34532 GCTGCTCAGGCTCACGGATGTAAGTG-TCGATGAGCAGCGAGTAGGTCTCCGAGTGGATG 34590 Query 120955 CACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC--CAGCTCGGGCACCGCCC 121012 ||| |||| | || ||| ||| | | ||||| | || | | | || Sbjct 34591 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTG---AACTTCC 34647 Query 121013 G--CTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGAACGC 121070 | ||| | ||| | ||||| || ||||||| || | || ||||||||||| Sbjct 34648 GAACTG-AAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGC 34706 Query 121071 CAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGCGCAAAATCGTCATA 121130 ||||| ||| ||||||||| ||||| | ||| | ||||||| | | |||| Sbjct 34707 AAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAG 34766 Query 121131 GTCCTTGGACAGGTCGACCTCCTC 121154 ||||||||| ||||||| |||||| Sbjct 34767 GTCCTTGGAAAGGTCGATCTCCTC 34790 >seq2363 Length=266066 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| ||| | ||| || | ||| ||||||||||| | Sbjct 64117 GTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCC--GTCTTCGAGCTGCTTAC 64174 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || ||||| |||||||||||||| |||||| || Sbjct 64175 CAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCT 64234 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || |||| || | ||| ||||| || || | Sbjct 64235 TGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCG 64294 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 64295 TCTTAACAAAGATCTGCAT 64313 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | || |||||||||||||| Sbjct 63889 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCA-TCTTCGAGCTGCTTGCC 63947 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 63948 GGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 64007 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| |||| ||| ||||| || || || Sbjct 64008 GACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGT 64067 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 64068 CTTGACAAAGATCTGCAT 64085 >seq999 Length=205769 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| || | ||| ||| |||||||| Sbjct 80436 AAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT--ACGTCCGTCCTCGA 80379 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || |||||||||||||| || ||||| |||||||| || Sbjct 80378 GCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 80319 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | | |||||| |||| |||| ||| || | Sbjct 80318 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTAC 80259 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || |||||||| Sbjct 80258 CCGTGAGGGTCTTGACAAAGATCTGCAT 80231 >seq1585 Length=212 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | |||| ||| || |||||||| || Sbjct 191 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCA 132 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| || ||||| || |||||||| |||||| |||| Sbjct 131 GCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 72 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | |||||| || | ||||| || |||||||||||||| Sbjct 71 ACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTC 12 Query 133644 TTTACGAAAAT 133654 || || || || Sbjct 11 TTGACAAAGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404514761800