Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1110 93.3 5e-14 >seq1110 Length=465757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 425/668 (64%), Gaps = 42/668 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||||||||||| |||||||| | |||| || ||| ||| || || || | ||| Sbjct 290959 ATCTTGAGCTTAGGGAAGGGAAGCGGGTCTCTCTCCAACTGCGCCTTGAGCGGTTGCACA 291018 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC-- 146989 |||| ||| ||||| || || |||| | | | | || || || || || Sbjct 291019 TGGTCCTTGTAAACGTGAGCATCACCCATTGCCAGTATGA-GTTCCTTGGGTTC--GCAA 291075 Query 146990 -CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 ||||||| | ||| | ||||||||| |||| || ||||| || |||||||| || || Sbjct 291076 TCGGTCACTTTGGCGATCATGTAGGTTAGCAACGCATAGCTAGCAATGTTGAAAGGTACA 291135 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT-------------- 147094 |||| || | ||| | || | |||||||| |||||||||||| | Sbjct 291136 CCCAACCCAAGGTCGCAGGAACGCTGGTACATCTGGCACGAGAGGTGCTTTTTACCTTGA 291195 Query 147095 CCC-------CGTCGGCCACGT---------AAAACTG-GCACAGGATGTGGCACGGCGG 147137 ||| | || ||| || | || || ||| | |||||||| ||||| Sbjct 291196 CCCTTCGAATAGGCGTCCAGGTTCGAGACAAAGAATTGAGCA-AACATGTGGCATGGCGG 291254 Query 147138 CAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-T 147196 |||||||| || || || |||||||| || || || | || | | || Sbjct 291255 AAGCGCCATCAGTTCGAGATCTGCCGGGTTCCATGCGCTGAGCAAGATACGAC-GATCGG 291313 Query 147197 CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGT 147256 || || | ||||| ||||| || | ||| || || || ||||| || ||| Sbjct 291314 TAGGATTGTTGCGAATCTTGTCGATCACGGAAGCCAGTTGATCGACACCCTGACCGGCGT 291373 Query 147257 AGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTG 147316 ||| || | ||||| |||| | || |||||||| | ||| ||||| || || || | Sbjct 291374 AGTCGGTATCACAGTCTTTGTACGTAGCACCAAAGTGTCGCCATTGGAAACCATAGACGG 291433 Query 147317 GCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG-CTTGAGAAACTCGGGGGAC 147375 | || || ||||| | | |||||| || || | | | ||| || | | || Sbjct 291434 GTCCTAGATCGCCTTCCCGACGATGCGAG-AGTCCACGAGAGTCGAGGAAGGCCCGAGAT 291492 Query 147376 CCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| | ||||||| ||| ||| | ||| ||| ||| ||| | || || || Sbjct 291493 CCGTTGCCGTCCCAAATGTGCACGCTCTTCTCGGTGAGAAGCTTGGCATCGGTTTTACCA 291552 Query 147436 CGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGC 147495 | | ||||||||| | |||||||| || || | | || || | ||||||||| ||| Sbjct 291553 CCCACGAACCAGAGTAACTCCTCCAGCACTCCGCGGAAGAACACTCGCTTGGTGGTGAGC 291612 Query 147496 AGGGGGAA 147503 || || || Sbjct 291613 AGAGGCAA 291620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583468343748000