Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2275 228 1e-54 seq2563 102 1e-16 >seq2275 Length=103831 Score = 228 bits (252), Expect = 1e-54 Identities = 899/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || || || ||||| || ||| |||| ||| || || || Sbjct 43118 GTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGA 43177 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || ||| ||||| || | || ||| | Sbjct 43178 AGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGC 43237 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| | | | || | ||| |||||||||| |||| | Sbjct 43238 CTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCA 43296 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || || || ||||| || || | | || || ||| || || ||||||| Sbjct 43297 ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCA 43356 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-T 111003 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| | Sbjct 43357 GCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT 43415 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | || | || | | || ||||| || || | | || || ||||||| || || Sbjct 43416 CGCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCC 43474 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || || Sbjct 43475 CTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGG 43534 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || |||| |||| ||| || || ||| | ||| | | || Sbjct 43535 ATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG 43594 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGAT 111240 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 43595 CAGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGAT 43651 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || | ||||| || ||| ||| || | | ||||||| | || || ||||| Sbjct 43652 CGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACA 43711 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || || Sbjct 43712 CAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 43771 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||||| || ||| | || | |||||||| |||||||| | ||| || || | ||| | Sbjct 43772 CTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAG 43831 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | || ||| | | || || || | || ||||| |||||||| ||||||| Sbjct 43832 CTTCTGCGCTTTG-ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGC 43890 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||||||| ||||| ||||| ||||| || || || || || | || | Sbjct 43891 GCTCAAACTCGTCACCGTAGCAGTCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGCG 43950 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || | ||| |||| ||||||||| || || || | ||| || | | | Sbjct 43951 ACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGA 44010 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 |||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 44011 AGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 44070 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || |||| ||||||||| |||| || | || | | || ||||| | Sbjct 44071 AGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGG---GACGCTTGTTGC 44127 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 44128 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 44187 Query 111774 --CTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATG 111829 |||| ||| || || || ||| ||||| || | | | ||||||| Sbjct 44188 TGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGG--TGCCACGGATGCAATGGATG 44243 Query 111830 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 | | || || || || ||| ||| ||||| ||||| | | || || | ||| Sbjct 44244 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 44303 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 || |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| Sbjct 44304 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 44363 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTT 112008 || ||||| || |||||||| || || | ||||| | || ||| || | ||||| Sbjct 44364 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAG-TACTTTTGCGACATAAG 44422 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | || ||||| | ||||||||||||| ||||| ||||| Sbjct 44423 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 44482 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 44483 GAGCATGTGCTGGGG 44497 >seq2563 Length=74346 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || ||||| ||||| Sbjct 34281 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34340 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | |||||| || ||||| ||||| Sbjct 34341 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34400 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| || |||||||| | || || |||||||| Sbjct 34401 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628010843172000