Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2034 275 2e-68 seq2363 156 1e-32 seq1585 123 8e-23 seq2104 107 6e-18 seq1 93.3 1e-13 >seq2034 Length=137209 Score = 275 bits (304), Expect = 2e-68 Identities = 886/1360 (65%), Gaps = 25/1360 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 37612 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 37553 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 37552 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 37493 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | ||||| ||| | || || || || | || || || | || Sbjct 37492 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 37433 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| | || || | ||||| ||| | || || Sbjct 37432 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTC----GACGACGCTGAGGTCCA 37377 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | ||||| | ||| | | ||||| || || || Sbjct 37376 GTCTGACATGAAGCACTGGCCTTTC---GAGGTTACCTCGGTCGGTGGCAAGCCCCAGAT 37320 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGG 349553 | ||||||| || ||||| || || | ||| |||||||| || ||||| |||| Sbjct 37319 TCGCATTGAATACAAGGGTGAG-AAGAAGACTTTCACTCCCGAAGAGATCTCATCCATGG 37261 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | | || ||| || | ||| || || || | |||| || || | ||||||| Sbjct 37260 TTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACCGTCAAGGATGCTG 37201 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 37200 TCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTA 37141 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||| |||| | || || | | || || || || ||||||||||| || || || | Sbjct 37140 TCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTT 37081 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || || ||| |||| ||||| ||| | ||||| | Sbjct 37080 ACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAATGTTCTCATTTTCGATCTCGGTGGAG 37021 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || |||||||| || || || |||| ||||| || || || || || || || | Sbjct 37020 GTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCG 36961 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 36960 CTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCC 36901 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| |||| || | ||| | || || | || | ||||| Sbjct 36900 AGGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCCCTTCGTCGT 36842 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || || | || || | || Sbjct 36841 CTTCGCACTGCTTGTGAGCGTGCCAAGCGTACTCTCTCGTCGGCTGCTCAGACGACCATC 36782 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || ||| || | || |||| | || || || ||||| || || Sbjct 36781 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 36722 Query 350093 GAAGAATTATGTATGGATCT-TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | ||| || || || | | | || || || ||||| || || || | Sbjct 36721 GAGGAGCTCTGTGGTGACCTCTTCTCGCAC-ACCATTGAGCCTGTCGAGAAGGTTCTCCG 36663 Query 350152 AGA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 || | ||| | || | | || | || | || | || | || ||||||||||| | Sbjct 36662 CGACTCCAAGATTGACAAGGGCTCTG-TTCACGAGATCGTCCTTGTCGGTGGTTCTACTC 36604 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || || | || | || || || || || || | | | | Sbjct 36603 GTATCCCCAAGGTGCAGAAGCTGCTCACCGACTTCTTCAACGGTCGTGAGCTTAACAAGT 36544 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || | Sbjct 36543 CGATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTTTCGG 36484 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | ||| || | | | || || | || || ||||| |||| || ||| Sbjct 36483 G---TGACACTTCAGAGAAGACTCAGGACCTGCTCCTTCTCGATGTTGCTCCTCTCTCGA 36427 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || | |||| || | || ||| || || || | ||||| | Sbjct 36426 TGGGTATCGAGACCGCCGGTGGTGTCTTCACACCTCTCATCAAGAGGAACACCACTGTGC 36367 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| | | || || || | ||| || || ||||| | ||| || | Sbjct 36366 CCACCAAGAAGTCGGAGATCTTCTCGACTTATGCCGACAACCAGCCCGGTGTATTGATCC 36307 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 | || || || || || ||||| ||||| ||||| || || Sbjct 36306 AGGTGTTCGAGGGCGAGCGTGCCCGCACCAAAGACAACAA 36267 >seq2363 Length=266066 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || |||||||| ||||| || || || Sbjct 64083 CATACCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 64142 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 64143 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 64202 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || || || || || || || || || || | || || | || Sbjct 64203 AGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 64262 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || || || ||||| |||||||| Sbjct 64263 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 134 bits (148), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| || || || ||||| || || || || | || || ||||||| Sbjct 63876 GACCAAG-TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTT 63934 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 63935 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTT 63994 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || || || | || || | || ||||| || || | |||| Sbjct 63995 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCT 64054 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| |||||||| Sbjct 64055 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 64085 >seq1585 Length=212 Score = 123 bits (136), Expect = 8e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| ||||| || ||||| || || || || || || || | || || || |||||| Sbjct 203 ACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCA 144 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||||||||| ||||| ||||| ||||| || || || || || ||||| Sbjct 143 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGG 84 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| || || | || || | || || ||||| || | ||||| Sbjct 83 ATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTG 24 Query 140709 CCGGTTAGTGTTTTTACAAAAAT 140731 ||||| || || || ||||| || Sbjct 23 CCGGTCAGAGTCTTGACAAAGAT 1 >seq2104 Length=129475 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 31692 ATACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 31633 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 31632 GAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 31573 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || |||||||| || || || ||||| || || | || || | || Sbjct 31572 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 31513 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| |||| ||||| || ||| |||| Sbjct 31512 ACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 31481 >seq1 Length=527495 Score = 93.3 bits (102), Expect = 1e-13 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| || | |||||| || || | || | | || || | || ||| | || Sbjct 305204 AAGATGAAAGAGACTGCTGAGGCTTACCTCGGCCACAAGGTCACCCACGCCGTTGTCACC 305145 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| || || || ||||| || || || |||||||||| ||| || Sbjct 305144 GTTCCCGCCTATTTCAACGACGCTCAGCGACAGGCCACTAAGGATGCTGGCACCATCGCT 305085 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || |||| | || || || || ||||| || || || || || || Sbjct 305084 GGTCTTAACGTGCTGCGAATCGTCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTC 305025 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| | || || ||| ||| | || ||||||||||| Sbjct 305024 GACAAGAAG---GACGGTGAATCGCAGATCATTGTTTACGATCTTGGCGGTGGTACTTTC 304968 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || || || | |||| ||| | || || ||| || ||||| || || Sbjct 304967 GACGTGTCGCTCCTCTCGATTGACTCGGGCGTCTTCGAGGTTCTTGCCACTGCCGGCGAC 304908 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || || |||||||| || || ||||| || || |||||| Sbjct 304907 ACTCACCTTGGTGGTGAGGACTTTGACAACCG---CGTTTC 304870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515202078739085