Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2275 298 6e-76 seq2363 176 5e-39 seq999 170 2e-37 seq1585 161 1e-34 seq2104 154 2e-32 seq2563 105 8e-18 >seq2275 Length=103831 Score = 298 bits (330), Expect = 6e-76 Identities = 1142/1756 (65%), Gaps = 73/1756 (4%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 |||||||||||||| | ||||||||||| ||||| ||||||||||| | |||||| || Sbjct 42771 GTCCGCAGATAGTATGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCATCGAG 42830 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| ||| || || | | | ||||| || ||||| ||||| ||||| Sbjct 42831 GTGAGCTGTCCAAACGTCGGTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATA 42890 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || || ||||| || || || | ||| || || ||||| || || Sbjct 42891 AACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTC 42950 Query 80218 CGATACACCTTAC-GAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTC 80273 |||| ||| || || || |||||| | || || || | || |||| Sbjct 42951 TTGTACAGCTTCTTGATGCGG-TCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTG 43009 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | | || | || |||| | | ||| ||| | || ||| ||| || || Sbjct 43010 CGCGATGATACGGTTCTTCA-TCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCA 43068 Query 80333 CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTT 80391 | | ||| | || ||||| |||||||| || || ||| || | ||| Sbjct 43069 ACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTG 43127 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || |||||||| || |||||| || ||||||||| ||| || |||||| Sbjct 43128 GACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGC 43187 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAA 80508 ||||| | | || ||| || || || || |||||||| ||| | ||| | || Sbjct 43188 ATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGC--- 43244 Query 80509 TCTGACCAAAAAT-CAACCCCAACGCTGTGACCCC--ACATGTCGTGCTGCAAGATGCCC 80565 || | ||| || || ||| |||||||| ||||||||| |||||| ||| Sbjct 43245 TCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCC 43304 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| || || || || ||| |||||||||| ||| | | || |||||||| ||| Sbjct 43305 TGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCAC 43364 Query 80626 GA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 || |||| || || ||||| || ||| |||||||| | ||||| | || Sbjct 43365 GATCGCTCC---AGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA 43421 Query 80683 GCCTGTGGGTCG--TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 ||| | || || || |||| | ||||| ||||||||| | || || |||||||||| Sbjct 43422 GCC--TCGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAA 43479 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAA 80799 | ||||| ||||||| ||||| ||| |||| || | || | |||||| | || || Sbjct 43480 CACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGC-GCCTCCTCGACCGGATAG 43538 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCCGTGTAACATCATGAAG 80858 ||||| | ||||||| ||||||||| | || | | || | ||| || || Sbjct 43539 TAGTTAATGTCGATGATCTTGTTCAGGTT-CTTGCAGATGGCCTTGGCAACGCTGTGCAG 43597 Query 80859 TTTCTGAAAGTCGAA----TTGGTTCCCCT---TC-ACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||||| | ||||| | || || | || | || || | || Sbjct 43598 ACGCTTAAAGTCGTACGTCTTGGT--CACTGGGTCAATGAACGTGGGCAGTGCGATCGAG 43655 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || |||||||| |||||||| || | | | | |||||| ||| || || ||||| Sbjct 43656 GCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAG 43715 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || |||| || || || ||||| |||||||| |||| |||| ||||||||| Sbjct 43716 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 43775 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || ||| | ||| | || |||||| |||||||| ||||||||||| ||| | || Sbjct 43776 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 43835 Query 81091 CGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 |||| ||||| | | | | | | || |||||| | || |||| || Sbjct 43836 TGCGCTTTGACGGTGCGCTTCGAGCGA----CCCTCGGCCTCGTAGCGCTCGTAGAGGCG 43891 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | |||||| | || || | || | ||||||||||| |||||||| || Sbjct 43892 C-TCAAACTCGTCACCGTAGCAG-TCGGCTAGACCAGGGCACTCGTTGGGGCACATGAGC 43949 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||||||| || | ||| || ||||||||| ||||| | |||||| || | Sbjct 43950 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAG 44009 Query 81265 AACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || || || || ||| ||| ||||||| | || ||||| ||||| ||||| || || Sbjct 44010 AAGAGCTCACGCGCA-CGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44068 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------ 81377 | || ||||| |||||||| || | || | || | | || | |||| Sbjct 44069 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTT 44125 Query 81378 GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||||||| |||||| || ||||| ||| || || || | ||| || | || || Sbjct 44126 GCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCC 44185 Query 81438 AT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 | ||||| |||||| || || | || ||| || || | || | | || || Sbjct 44186 GTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATG--GA 44241 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| | | ||| || ||| ||||| || | ||| || | Sbjct 44242 TGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGT 44301 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || ||||| || | |||||| || | ||| || || | ||| ||| Sbjct 44302 AGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGT 44361 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||||| ||||| || || || | ||||| | || || | ||||| | Sbjct 44362 GCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAA 44421 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || || ||| || || | ||||| || |||| ||| || |||| Sbjct 44422 GGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCA 44481 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 44482 TGAGCATGTGCTGGGG 44497 >seq2363 Length=266066 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||||| Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 64025 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 63966 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| || || | ||||| || Sbjct 63965 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 63906 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | |||||||| || || Sbjct 63905 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 63859 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 64253 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 64194 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| ||||| || | || || || | ||||| || Sbjct 64193 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 64134 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| || || ||||| || |||||||| Sbjct 64133 ATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTCCGCGGTGG 64087 >seq999 Length=205769 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 80231 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCG 80290 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 80291 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 80350 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 80351 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAAC 80410 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 80411 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80457 >seq1585 Length=212 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 |||||||||||||| || ||||||||||| || || |||||||| ||||| || | Sbjct 1 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 60 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | ||| | ||||| || || |||||||||||||| || || || |||||||||||| Sbjct 61 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 120 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || |||||||||||||| || || || | || || || | ||||| || |||| Sbjct 121 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 180 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||| || || ||||| || || ||||| || Sbjct 181 AAGGAGTCGACACTTCACCTTGTGTTGCGACT 212 >seq2104 Length=129475 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| |||||||| ||||| || | ||| | ||| | ||||| Sbjct 31487 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31546 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| || || || || |||||| Sbjct 31547 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31606 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| |||||||| || || || Sbjct 31607 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31666 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 31667 CTTGTGCTCCGTCTGCGTGGTGG 31689 >seq2563 Length=74346 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || || || || || || || || |||||| || | Sbjct 34432 AGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGA 34373 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| ||||| |||| || |||||||| |||| Sbjct 34372 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCT 34313 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 | || |||||||| || ||| || ||||| | || || ||||||||||||| Sbjct 34312 CGCGTGACGAGGGTCTTCACACGGACTTTGCC--TGCCTTCTCTTCAGCCACCTCA 34259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291187668400