Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2363 131 1e-25 seq1585 98.7 9e-16 >seq2363 Length=266066 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | |||||||| ||||| || | || Sbjct 64313 ATGCAGATCTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 64254 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 64253 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 64194 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||| || || || | |||||| | ||| || | ||||| ||||| Sbjct 64193 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGC-CGAACGCTCTCCGACTACAA 64135 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||| | || | || ||||| | || ||||| || Sbjct 64134 CATTCAGAAAGAGTCGACGCTTCACCTTGTATTGCGACTCCGCGGTGGTAT 64084 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || ||||| ||||| || | || Sbjct 64085 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 64026 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 64025 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 63966 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | ||||| || || | || || |||||| Sbjct 63965 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 63906 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || || | || ||||| | ||| | || || ||| Sbjct 63905 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGC 63858 >seq1585 Length=212 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 || ||||| || ||||||||||||||| | || || ||||| ||||| | |||||| | Sbjct 1 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 60 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || || | ||||| || || || ||||| || || || || || || || |||||| Sbjct 61 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 120 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | || || || || | |||||| | || | || || |||||||| || Sbjct 121 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 180 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||||||||| | || | || ||||| Sbjct 181 AAGGAGTCGACACTTCACCTTGTGTTGCG 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434903748686400