Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq999 138 1e-27 seq2104 122 8e-23 seq2363 120 3e-22 seq1585 114 1e-20 >seq999 Length=205769 Score = 138 bits (152), Expect = 1e-27 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| ||||| ||||| || Sbjct 80457 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80398 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||| Sbjct 80397 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80338 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||||| Sbjct 80337 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACTCCA 80280 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || |||||||| || ||||| || || |||||||| || Sbjct 80279 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 80228 >seq2104 Length=129475 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || |||||||| ||||| ||||| ||| Sbjct 31689 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 31630 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 31629 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 31570 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | || | | | ||||| |||||||| Sbjct 31569 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCAC 31511 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 31510 CTCAAGGGTAATGGTCTTACCTGT 31487 >seq2363 Length=266066 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || || || || ||||| ||| ||||||||||| ||||||||| Sbjct 64087 CCACCGCGGAGTCGCAATACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 64146 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || || ||||| || || | ||| Sbjct 64147 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 64206 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || | || || | ||| | | | ||||| ||||| || Sbjct 64207 ATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 64265 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || ||||| |||||||| || || |||||||| Sbjct 64266 TTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAGATCTGCAT 64313 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||| || || ||| |||||||||||||| ||||| | Sbjct 63857 CGCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCG 63916 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||||| | || ||||||||||||||||| || || || ||||| || || | | Sbjct 63917 ACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAG 63976 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| || ||||||| | || | || || | ||| | | | ||||| ||||| Sbjct 63977 GAATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCG 64035 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || |||||||| || || |||||||| Sbjct 64036 ACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 64085 >seq1585 Length=212 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || ||||| || || || || ||||||||| ||||| ||||| ||||| ||||| Sbjct 212 AGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 153 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || || || ||||| ||||| | ||| | | |||| Sbjct 152 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 93 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 |||||| ||| || ||| || | ||| |||||| ||||||||||| | | Sbjct 92 TTGTCCTGGATCTTGGCCTTGACATTGTCGATT--GTGTCGGAAGACTCCACCTCAAGGG 35 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 | ||||| || || ||||| ||||| || || || Sbjct 34 TGATCGTCTTGCCGGTCAGAGTCTTGACAAAGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288426134000