Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq180 132 5e-26 >seq180 Length=182808 Score = 132 bits (146), Expect = 5e-26 Identities = 398/605 (66%), Gaps = 22/605 (4%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATAAGACGTA 16856 ||| || ||| | || || ||| |||||| | || || |||||| || || | || | Sbjct 14400 ATCGGCGACATACTCAATGTATGTGCACATGAGCTTTGC-GTTCATGCCGATCAAACTAA 14458 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 | || || || || ||||| || ||||| || || || || || |||| ||||| Sbjct 14459 CGGGCAGGGCATCGGTCAAGAAGCGTTGTTCGATGGAGACGGCCTCGGTAATGATACTCA 14518 Query 16917 CAACTCGTTCCTCGGACGGTGTATGT-----TTAAGATGTTTAAACATCAGACATGCGAA 16971 ||| || |||| ||||| | || ||||| | || | ||||| || || Sbjct 14519 GAACG-GTG--TCGG--GGTGTGCGCGCTTCTTGAGATGGCTGAAGAGGAGACAGGCAAA 14573 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| || | || || || | | ||| || ||||| || || || | |||||||| Sbjct 14574 GTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 14633 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || || ||||| | ||| || || | ||||||||| ||||| ||||| |||||||| Sbjct 14634 GAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATACCCTC 14693 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 ||||| ||||| || | | |||||||| | || ||| |||| | ||||| Sbjct 14694 GACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCTTGTCGCTGATCCAGCG 14753 Query 17152 CTGCACCCACTCGGCTTTTTGCTT---TATGCAATCCATCGTTTCTATGGCCTTAAATA- 17207 | |||| || || || | ||| || | | || || || | ||| | ||| | Sbjct 14754 AAGGGCCCAGTCAGCCTTCTCCTTGACTACGGGA---ATGGTCTCGACGGCGTCAAAGAG 14810 Query 17208 -ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | || | | | | | | || || || || |||||||| || ||| | ||| Sbjct 14811 GAACTCGCGCTGTTCAG--GCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCG 14868 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| ||||||||||| |||||||| ||||| ||||||||||| || || || Sbjct 14869 GAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGGCCTCGGCAGCCTGG 14928 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 || || | |||||| || | || || ||||| ||||| |||||| |||||||| Sbjct 14929 ACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAG 14988 Query 17387 AACGC 17391 || || Sbjct 14989 AAGGC 14993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544015016600