Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq180 405 5e-108 seq199 141 1e-28 seq55 140 3e-28 seq112 129 6e-25 seq8 114 1e-20 >seq180 Length=182808 Score = 405 bits (448), Expect = 5e-108 Identities = 537/730 (74%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||| || || || |||||||||| ||||||| | ||||| Sbjct 15122 ATCTGGCAAATGTACAAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 15063 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || || ||| ||| ||||| | | |||||||| ||||| || |||||| | Sbjct 15062 TCAAAAGACCTTCACGATTGGGACAACAAACTCAACGACAATGAGCGTCACTTCATCTCG 15003 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||||||| |||||| |||||||||||||| || |||||||| Sbjct 15002 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCGA 14943 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| | |||| |||| |||||||| || ||||||||||||||||||||| || Sbjct 14942 TTCAGCTCCG-AGGTCCAGGCTGCCGAGGCCCGATGCTTCTACGGCTTTCAGATCATGAT 14884 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | ||||| || | || ||| |||||||||||| ||| | || | || Sbjct 14883 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCCTGA 14824 Query 116932 GGAG---AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || || ||| | || ||||| ||||||| || || ||||| |||||||| Sbjct 14823 ACAGCGCGAGTTCC---TCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGAGAAGGC 14767 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGG 117047 || ||||| || ||||||||| || || || | ||| |||| | ||| || || || | Sbjct 14766 TGACTGGGCCCTTCGCTGGATCAGCGACA-AGCGCGCCACCTTTGCCGAACGTCTCGTTG 14708 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || ||||||||||| ||||||| || ||| |||||| |||| || ||||||| Sbjct 14707 CCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTCA 14648 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| || || ||| |||||||||||||||| | || || | Sbjct 14647 AGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAAG 14588 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCG-ACCGAGCGCG 117226 | || || ||||||||||||| | || |||| ||| | | |||| | | | || Sbjct 14587 GCCTTCACACCGACTTTGCCTGTCTCCTCTTCAGCCATCTCAAGAAGCGCGCACACCCCG 14528 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | ||| | ||| | ||||| || ||| ||||||| || |||||| | ||||| Sbjct 14527 ACAC-CGTTCTGAGTATCATTACCGAGGCCGTCTCCATCGAACAACGCTTCTTGACCGAT 14469 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA-ATACATCGAGT 117344 || ||||| || || || | || | || || || | |||| ||| |||||| |||| Sbjct 14468 GCCCTGCCCGTTAGTTTGATCGGCATGAA-CGCAAAGCTCATGT-GCACATACATTGAGT 14411 Query 117345 TCGTCGCCGA 117354 |||||||| Sbjct 14410 ATGTCGCCGA 14401 >seq199 Length=93844 Score = 141 bits (156), Expect = 1e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || ||||||||| |||| || || | Sbjct 53888 AAGATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 53829 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| |||||| || || | ||||| ||||| || ||| | || Sbjct 53828 TCCGACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGA 53770 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| ||| || || ||||| || |||| |||||||| ||||| Sbjct 53769 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 53710 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| |||| || || || ||| | ||| Sbjct 53709 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 53670 >seq55 Length=29365 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| ||||| || |||||| |||| ||||| || || Sbjct 16441 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCC 16382 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| || ||||| || | ||||| Sbjct 16381 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCA 16323 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 16322 GCAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAA 16263 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| | || || || || ||| Sbjct 16262 CATTCAGAAGGAGTCTACCCTCCACCTTGTG 16232 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || |||||||| | || ||||| || | Sbjct 16213 ATGCAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCG 16154 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| || ||||| || | || ||| Sbjct 16153 GACACCATCGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGATCAG 16094 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 16093 CAGCGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTACAAC 16034 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 16033 ATCCAGAAGGAGTCTACCCTTCATCTCGT 16005 >seq112 Length=308905 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || || || ||||| ||| | || ||||| | | Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||||| || |||| || |||||| ||||||||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| || || || Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCACCTCGT 97018 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || ||||| | | Sbjct 96998 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCTTCT 96939 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| || || |||||||| ||| | |||||| Sbjct 96938 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAG 96879 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || || ||||| || || | ||||| || ||||||||| Sbjct 96878 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGTCTGACTACAAC 96819 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| ||| || || || || ||||| Sbjct 96818 ATTCAGAAAGAGAGCACCCTCCACCTCGTATTGCG 96784 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || || || ||||| ||| | || ||||| | | Sbjct 97454 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97395 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| || || ||||| ||||| | |||||| Sbjct 97394 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 97335 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | || || || ||||| || |||| || |||||| ||||||||| Sbjct 97334 CAGCGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97275 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| || || || Sbjct 97274 ATCCAGAAGGAGTCTACGCTTCACCTCGT 97246 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || || ||||| | || || || | | Sbjct 96770 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACGATCACTTTGGAGGTTGAGTCTTCG 96711 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| || || ||||| ||||| | || ||| Sbjct 96710 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGATCAG 96651 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| || || || ||||| || |||| ||||| || | |||||||||| Sbjct 96650 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGCGACTACAAC 96591 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | ||||| || || ||| Sbjct 96590 ATCCAGAAGGAGTCGACGCTTCACCTGGTG 96561 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || || || || ||||| | || ||||| | | Sbjct 96542 ATGCAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCT 96483 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| || || ||||| ||||| | |||||| Sbjct 96482 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 96423 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| || || || ||||| || || | || || || | ||| |||||| Sbjct 96422 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAAC 96363 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || || || || ||||| || | |||||| Sbjct 96362 ATCCAGAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGTGGCGGC 96315 >seq8 Length=117649 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTC 40767 |||| || || || ||||| ||| | || || || || | |||| | | | | || Sbjct 82261 ACGCCAACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTC 82320 Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| ||||| ||||| |||||| | |||||||| || || |||| ||| Sbjct 82321 AAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCC 82380 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 || || ||||| || |||| ||||||||| ||||||||||||||||||||| | || Sbjct 82381 GGTAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 82440 Query 40888 CTGCATCTAGT 40898 || || || || Sbjct 82441 CTCCACCTCGT 82451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217622141200