Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 3e-12 >seq8 Length=117649 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 205392 ATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATG 205451 ||| | ||| |||| ||| || || |||| || || | ||||| ||| || | | Sbjct 22673 ATAAACATGAGCATCACCCATGGTAAGAATCAACTCCTTTGGTTGACAATCCGTCACTTT 22614 Query 205452 TGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCAT 205511 ||||||||| ||||||| ||| ||||||||||| || || |||||||||| ||| | Sbjct 22613 AGCAATCATACAAGTCAACAAAGCATAACTAGCAATGTTGAAAGGTACACCTAGACCTAA 22554 Query 205512 ATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 ||| || | ||| ||||||||||| | || | ||| ||| Sbjct 22553 ATCGCAAGAACGTTGGTACATTTGACACGAGAGTTGTTTTTTA 22511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453686416000