Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq55 145 7e-30 seq112 127 2e-24 seq199 95.1 1e-14 seq8 91.5 1e-13 >seq55 Length=29365 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||| || ||||||||||| ||| | |||||| |||||| Sbjct 16232 CACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTC 16291 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || ||||||| |||||||| ||||| || ||||| |||||||| Sbjct 16292 GAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTG 16351 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | | ||||||||||| ||| | || || Sbjct 16352 GATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTT 16411 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || |||||||| |||||||| Sbjct 16412 GCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || | ||| || ||||||||||| ||||| Sbjct 16017 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTGCTTTCCG 16076 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||||||||| || || ||||| |||||||| ||| || || Sbjct 16077 GCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTG 16136 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| | ||||||||| | || | || || ||||||| ||| Sbjct 16137 ACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGTC 16196 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 16197 TTGACAAAGATCTGCAT 16213 >seq112 Length=308905 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || | ||| | ||| ||||| || || |||||||||||||||| || || ||| Sbjct 96330 CAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATC 96389 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| | |||||||| |||||||| || |||||||| || Sbjct 96390 CTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATC 96449 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | || | ||| || | ||||||||| | || | ||| Sbjct 96450 CTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGT 96509 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||| || || |||||||||||||| Sbjct 96510 CTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | || ||| || | ||||| || |||||| ||||||||||| || Sbjct 96770 TACCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAG 96829 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| ||| |||||||| ||||| ||| | ||||| |||||||| || || | Sbjct 96830 ACAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGG 96889 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || ||| || || || | || | ||| || | ||||| Sbjct 96890 GAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGA 96949 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || |||||||| || || || ||||| |||||||| Sbjct 96950 CTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || | || || ||||||||||| || || Sbjct 97030 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCCG 97089 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||||||||| |||||||| || ||||||||||| ||| || || Sbjct 97090 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTG 97149 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||||||||| | ||| | || || ||||||||||| Sbjct 97150 ACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTC 97209 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| ||||||||||| Sbjct 97210 TTTACGAAAATCTGCAT 97226 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| |||||| || || Sbjct 96561 CACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTC 96620 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| | ||||||||||||||||| || |||||||| || Sbjct 96621 AAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCCTG 96680 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| ||| ||||| | || | ||| || Sbjct 96681 AATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTT 96740 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 96741 TCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || | || || ||||||||||| || ||| Sbjct 97258 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCA 97317 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | |||||||| |||||||| || |||||||| || ||| || || Sbjct 97318 GCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTG 97377 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||||||||| | ||| | || || ||||||||||| Sbjct 97378 ACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTC 97437 Query 118722 TTTACAAAAATCTGCATG 118739 ||||| || ||||||||| Sbjct 97438 TTTACGAAGATCTGCATG 97455 >seq199 Length=93844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 53676 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 53735 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || |||||||| || || || || ||||||||||| Sbjct 53736 GAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTG 53795 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| | ||| ||||||| ||| | || || Sbjct 53796 GATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 53855 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 53856 ACCCGTAAGGGTCTTCACAAAGATCTGCAT 53885 >seq8 Length=117649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 82446 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 82387 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| || |||||||| ||||| || || ||||||||||| ||| || Sbjct 82386 CTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTT 82327 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || | |||| |||||||| | ||| ||||| | ||| Sbjct 82326 GGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGT 82282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829104609540