Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq55 125 8e-24 seq199 122 1e-22 seq112 116 4e-21 >seq55 Length=29365 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || | || || |||||||| || || || Sbjct 16250 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAA 16309 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||||||||||| || | || ||||||||| ||| || |||| ||| Sbjct 16310 GATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 16368 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| || || || |||| ||||| || ||||| || || ||||||| Sbjct 16369 TGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTA 16428 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 16429 CAAAGATCTGCAT 16441 >seq199 Length=93844 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 53694 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 53753 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 53754 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 53812 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| |||||||| || ||||| || ||||| | Sbjct 53813 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTAAGGGTCTTCA 53872 Query 43171 CAAAGATTTGCATTTT 43186 ||||||| ||||| || Sbjct 53873 CAAAGATCTGCATCTT 53888 >seq112 Length=308905 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | || | |||||||| || ||||| ||||| |||| |||||| || | Sbjct 96784 CGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCA 96843 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| ||||||||||||||||| | || | || |||||| Sbjct 96844 TCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTA 96903 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | |||| | | | || || || || || || | ||||| Sbjct 96904 TCC-TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTGAT 96962 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||| ||||| Sbjct 96963 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||||| || |||| || |||||||||||||| || Sbjct 96579 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAA 96638 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||| |||| || | | |||||| ||| ||| | || | |||| Sbjct 96639 GATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCC-TGAATCTTGGCCTTGACAT 96697 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | ||||| || || || || || ||||| | Sbjct 96698 TGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGA 96757 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 96758 CAAAGATTTGCAT 96770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | || | ||| |||||| || || |||||||| ||| || || | Sbjct 96327 ACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCC 96386 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || | |||||||||||||| || | | |||||| Sbjct 96387 ATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTT 96446 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | |||| | | | || || || || || || | ||||| Sbjct 96447 ATCC-TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGA 96505 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || | |||||| ||||| || ||||| Sbjct 96506 TCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||||||||| || Sbjct 97263 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAA 97322 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||||||||| || | | |||||| ||| ||| | || | |||| Sbjct 97323 AATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCC-TGAATCTTGGCCTTGACAT 97381 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || || | || ||||| || || || || ||||||| Sbjct 97382 TGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTA 97441 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 97442 CGAAGATCTGCAT 97454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815848808600