Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq112 149 4e-31 seq55 127 1e-24 seq199 105 4e-18 >seq112 Length=308905 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || |||||||| ||||||||||| ||| Sbjct 96772 CCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGAC 96831 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||||||||| ||||||||||| ||| Sbjct 96832 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGA 96891 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | | || | ||| | || ||||| Sbjct 96892 ATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACT 96951 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || || |||||||||||||| Sbjct 96952 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || || |||| Sbjct 97015 AGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCC 97074 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||| |||||||||||| || | | ||||||||| Sbjct 97075 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 97134 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | || ||||| || | || ||||| Sbjct 97135 TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTC 97194 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || || |||||||| Sbjct 97195 TTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| | || || ||||| |||||||| ||| | Sbjct 96316 CCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTC 96375 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || || | |||||| || || || || | |||||||||||| || Sbjct 96376 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 96435 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | | || | ||| | || ||||| Sbjct 96436 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 96495 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || || ||||| | || || ||||| |||||||| Sbjct 96496 TCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || || ||||| |||||||||||| | Sbjct 96544 CCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 96603 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || || || || | |||||||| ||| || Sbjct 96604 AGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGG 96663 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | | |||| || | || || || Sbjct 96664 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACC 96723 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || || ||||| || || |||||||| ||||| Sbjct 96724 TCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || || |||| Sbjct 97243 AGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCC 97302 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || ||||| | |||||||||||| || | | |||||| || Sbjct 97303 TCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 97362 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | || ||||| || | || ||||| Sbjct 97363 TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTC 97422 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || ||||||||||| Sbjct 97423 TTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 >seq55 Length=29365 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || ||||| |||||||||||||| || || | || Sbjct 16230 AGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCC 16289 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| || ||||| |||||||||||| || | || |||||||| Sbjct 16290 TCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCC 16349 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| |||| || ||||| || | ||||| || Sbjct 16350 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTC 16409 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || ||||||||||||||| Sbjct 16410 TTGCCGGTGAGGGTCTTTACAAAGATCTGCATC 16442 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| || ||||| ||||||||||| || Sbjct 15987 CCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 16046 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||||||||| |||||||| || || Sbjct 16047 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGA 16106 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | || ||||| Sbjct 16107 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 16166 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || ||||| | ||| || |||||||||||||| Sbjct 16167 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq199 Length=93844 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| ||||||||||| || || ||| |||| Sbjct 53674 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 53733 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || || ||||||||||| ||| | | ||||||||| Sbjct 53734 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 53793 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 53794 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 53853 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || |||||||||||||||||| Sbjct 53854 TTACCCGTAAGGGTCTTCACAAAGATCTGCATC 53886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071035327200