Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq241 185 2e-41 >seq241 Length=120793 Score = 185 bits (204), Expect = 2e-41 Identities = 398/592 (67%), Gaps = 5/592 (1%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| ||||||||| |||||| || || ||| || || |||||| || | |||||| Sbjct 71082 TACAATTTCTTTGGTTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGTATCAACGGCAAG 71023 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| ||||| ||||||||| | ||||| || ||||| || || ||| | ||| Sbjct 71022 GTCGCCGAACGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATCCACGGCCAGGAC 70963 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||| | ||||||| |||| | ||| || | | || || || | Sbjct 70962 ATCGAGAGTGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTTACCCACGCTTCC 70903 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || ||||||||||||||||| | || ||||| ||||| || || | || Sbjct 70902 CCCACCCTCTTCAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACC 70843 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTC 249116 ||| | |||||||| ||||||||||||| ||||| || || || || | | ||| || Sbjct 70842 ATGAAGGACGACTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCC-ATGATCTC 70784 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || ||| || || || |||||| | || | ||| || | | ||||| ||||| Sbjct 70783 CAAGACCGCCGGTGGCATTGGTCTCAACATCCACTGCATTCGGGGTACCGGTTCCTACAT 70724 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 ||||| ||||| ||||| | |||||||||||| | ||||| |||| | ||| Sbjct 70723 TGCCGGTACCAATGGCGTCAGCAACGGTATCGTACCCATGCTTCGTGTCTTTAACAACAC 70664 Query 249237 CGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGA 249293 || | | | || |||||| || | || || | || ||||| || | || Sbjct 70663 GGCTCGCTACGTCGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACATTGA 70604 Query 249294 AGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCT 249353 |||||| | ||| | || |||||||| ||| || |||||| |||| || ||| Sbjct 70603 GCCTTGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGAGGA 70544 Query 249354 CATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || | || || || |||||||||| ||| |||||| |||| | |||||| Sbjct 70543 GGTGCGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATG 70492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763029380160