Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq112 129 5e-25 seq199 109 4e-19 seq8 91.5 1e-13 seq55 86.0 5e-12 >seq112 Length=308905 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 96562 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCA 96621 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| || |||||||| | ||||||||| ||| | Sbjct 96622 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCCTTATCCTGA 96681 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||| ||||||| || |||||||| Sbjct 96682 ATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTGATCGTCTTT 96741 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||||||||| Sbjct 96742 CCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| | ||| || |||||||| ||||||||||||||||| ||| ||| | || Sbjct 96787 AATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCT 96846 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| || | ||||| ||||| || || | |||||||| ||| Sbjct 96847 TCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 96906 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | | || | ||| || |||| ||| || ||| Sbjct 96907 TGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTGATGGTC 96966 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| |||||||| ||||| Sbjct 96967 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || || |||| || || || Sbjct 97251 GTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTG 97310 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||| ||||| ||||||||||| | ||||||||| ||| ||| || Sbjct 97311 CTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTT 97370 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || | ||| ||||| | |||||| ||||| || || Sbjct 97371 GGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGT 97430 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| || ||||| |||||| Sbjct 97431 CAGAGTCTTTACGAAGATCTGCATG 97455 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || || |||| || || || Sbjct 97023 GTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTG 97082 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||||||||| | ||||||||||||| ||| || Sbjct 97083 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 97142 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || | ||| ||||| | |||||| ||||| || || Sbjct 97143 GGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGT 97202 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||| || || || ||||| Sbjct 97203 CAGAGTCTTTACGAAAATCTGCAT 97226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| |||| || | || || || || || || || || Sbjct 96351 CTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 96410 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||||||||| | ||||||||| ||| ||| || ||| || Sbjct 96411 GATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATT 96470 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | ||| ||||| | || |||||||| || |||| ||||| || Sbjct 96471 GTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGAC 96530 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 96531 AAAAATCTGCAT 96542 >seq199 Length=93844 Score = 109 bits (120), Expect = 4e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| |||| || || || Sbjct 53682 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 53741 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 53742 CTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 53801 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 53802 GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGT 53861 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||||||||||||| ||||| ||| Sbjct 53862 AAGGGTCTTCACAAAGATCTGCATCTTG 53889 >seq8 Length=117649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || || |||||||| Sbjct 82434 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 82375 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | ||||||||||||| ||| || ||| || Sbjct 82374 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATT 82315 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | ||||| ||||||||| | |||||| ||||| || || Sbjct 82314 GTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGT 82267 >seq55 Length=29365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || |||| || || || ||||||||||| Sbjct 16022 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 16081 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || || || || | || ||||||||| ||| || ||| || Sbjct 16082 AATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATT 16141 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| ||||| | || || ||||| || |||| |||||| || Sbjct 16142 ATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGAC 16201 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 16202 AAAGATCTGCAT 16213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074020330145